Publications


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METABOLOME OF GRAPEVINE LEAF VEIN-ENRICHED TISSUE INFECTED WITH 'CANDIDATUS PHYTOPLASMA SOLANI'. / Prezelj, Nina; Fragner, Lena; Weckwerth, Wolfram; Dermastia, Marina.

In: Mitteilungen Klosterneuburg, Vol. 66, No. 1, 2016, p. 74-78.

Publication: Contribution to journal › Article

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Proteomics and metabolomics : Two emerging areas for legume improvement. / Ramalingam, Abirami; Kudapa, Himabindu; Pazhamala, Lekha T.; Weckwerth, Wolfram; Varshney, Rajeev K. (Corresponding author).

In: Frontiers in Plant Science, Vol. 6, No. DEC, 1116, 24.12.2015.

Publication: Contribution to journal › Article

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Assessing the molecular mechanism of D. radiodurans survivability in space: establishment of ground controls. / Kutlucinar, Kaan Georg; Weckwerth, Wolfram; Milojevic, Tetyana.

2015. Poster session presented at Astrobiology and Space Medicine workshop, Graz, Austria.

Publication: Contribution to conference › Poster

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Didymella pinodes impact on shoot and nodule development in Pisum sativum. / Turetschek, Reinhard; Wienkoop, Stefanie; Kaul, Hans-Peter; Desalegn, Getinet; Epple, Tamara.

2015. Poster session presented at micrope, Vienna, Austria.

Publication: Contribution to conference › Poster

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Medicago truncatula and Glycine max : Different Drought Tolerance and Similar Local Response of the Root Nodule Proteome. / Gil-Quintana, Erena; Lyon, David; Staudinger, Christiana; Wienkoop, Stefanie; González, Esther M.

In: Journal of Proteome Research, 06.11.2015, p. 5240-5251.

Publication: Contribution to journal › Article

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Heat-treatment-responsive proteins in different developmental stages of tomato pollen detected by targeted mass accuracy precursor alignment (tMAPA). / Chaturvedi, Palak; Doerfler, Hannes; Jegadeesan, Sridharan; Ghatak, Arindam; Pressman, Etan; Castillejo, Maria Angeles; Wienkoop, Stefanie; Egelhofer, Volker; Firon, Nurit; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteome Research, Vol. 14, No. 11, 06.11.2015, p. 4463-4471.

Publication: Contribution to journal › Article

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Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina. / Hasler-Sheetal, Harald (Corresponding author); Fragner, Lena; Holmer, Marianne; Weckwerth, Wolfram.

In: Metabolomics, Vol. 11, No. 5, 07.10.2015, p. 1208-1218.

Publication: Contribution to journal › Article

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Connecting signalling output to metabolic regulation reveals strategies of reprogramming a cellular energy homeostasis. / Nägele, Thomas; Nukarinen, E.; Pedrotti, L.; Droege-Laser, W.; Weckwerth, W.

In: The FEBS Journal, Vol. 282, 07.2015, p. 189-189.

Publication: Contribution to journal › Meeting abstract/Conference paper

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Pisum sativum´s cultivar specific taste for symbionts. / Turetschek, Reinhard; Holzbach, Stephan; Sassmann, Stefan; Desalegn, Getinet; Kaul, Hans-Peter; Wienkoop, Stefanie.

2015. Poster session presented at COST FA1306, Gatersleben, Germany.

Publication: Contribution to conference › Poster

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Differential CO2 effect on primary carbon metabolism of flag leaves in durum wheat (Triticum durum Desf.). / Aranjuelo, Iker; Erice, Gorka; Sanz-Sáez, Alvaro; Abadie, Cyril; Gilard, Françoise; Gil-Quintana, Erena; Avice, Jean-Christophe; Staudinger, Christiana; Wienkoop, Stefanie; Araus, Jose L; Bourguignon, Jacques; Irigoyen, Juan J; Tcherkez, Guillaume.

In: Plant, Cell and Environment, Vol. 38, 17.06.2015, p. 2780-2794.

Publication: Contribution to journal › Article

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Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms. / Wilhelm, Linda; Besemer, Katharina; Fragner, Lena; Peter, Hannes Markus; Weckwerth, Wolfram; Battin, Tom.

In: The ISME Journal: multidisciplinary journal of microbial ecology, Vol. 9, 15.05.2015, p. 2454-2464.

Publication: Contribution to journal › Article

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Effects of endogenous neurotoxin quinolinic acid on reactive oxygen species production by Fenton reaction catalyzed by iron or copper. / Kubicova, Lenka; Hadacek, Franz; Weckwerth, Wolfram; Chobot, Vladimir.

In: Journal of Organometallic Chemistry, Vol. 782, 15.04.2015, p. 111-115.

Publication: Contribution to journal › Article

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Iron chelation and redox chemistry of anthranilic acid and 3-hydroxyanthranilic acid : A comparison of two structurally related kynurenine pathway metabolites to obtain improved insights into their potential role in neurological disease development. / Chobot, Vladimir; Hadacek, Franz; Weckwerth, Wolfram; Kubicova, Lenka.

In: Journal of Organometallic Chemistry, Vol. 782, 15.04.2015, p. 103-110.

Publication: Contribution to journal › Article

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Leghemoglobin is nitrated in functional legume nodules in a tyrosine residue within the heme cavity by a nitrite/peroxide-dependent mechanism. / Sainz, Martha; Calvo-Begueria, Laura; Pérez-Rontomé, Carmen; Wienkoop, Stefanie; Abián, Joaquín; Staudinger, Christiana; Bartesaghi, Silvina; Radi, Rafael; Becana, Manuel (Corresponding author).

In: The Plant journal : for cell and molecular biology, Vol. 81, No. 5, 03.2015, p. 723-35.

Publication: Contribution to journal › Article

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Cultivar specific symbiotic teamwork in Pisum sativum. / Turetschek, Reinhard; Holzbach, Stephan; Epple, Tamara; Sassmann, Stefan; Desalegn, Getinet; Kaul, Hans-Peter; Wienkoop, Stefanie.

2015. Poster session presented at COST Workgroup Omics, Lisbon, Portugal.

Publication: Contribution to conference › Poster

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Fragmentation patterns of methyloxime-trimethylsilyl derivatives of constitutive mono- and disaccharide isomers analyzed by gas chromatography/field ionization mass spectrometry. / Furuhashi, Takeshi (Corresponding author); Ishii, Keisuke; Tanaka, Kazuo; Weckwerth, Wolfram; Nakamura, Takemichi.

In: Rapid Communications in Mass Spectrometry, Vol. 29, No. 3, 15.02.2015, p. 238-246.

Publication: Contribution to journal › Article

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Targeted quantitative analysis of a diurnal RuBisCO subunit expression and translation profile in Chlamydomonas reinhardtii introducing a novel Mass Western approach. / Recuenco-Muñoz, Luis; Offre, Pierre; Valledor, Luis; Lyon, David; Weckwerth, Wolfram; Wienkoop, Stefanie (Corresponding author).

In: Journal of Proteomics, Vol. 113, 15.01.2015, p. 143 - 153.

Publication: Contribution to journal › Article

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Plant innate immunity--sunny side up? / Stael, Simon; Kmiecik, Przemyslaw; Willems, Patrick; Van Der Kelen, Katrien; Coll, Nuria S; Teige, Markus; Van Breusegem, Frank (Corresponding author).

In: Trends in Plant Science, Vol. 20, No. 1, 01.2015, p. 3-11.

Publication: Contribution to journal › Article

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Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction. / Stare, Tjaša (Corresponding author); Ramšak, Živa; Blejec, Andrej; Stare, Katja; Turnšek, Neža; Weckwerth, Wolfram; Wienkoop, Stefanie; Vodnik, Dominik; Gruden, Kristina.

In: BMC Genomics, Vol. 16, No. 1, 2015, p. 716.

Publication: Contribution to journal › Article

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The quest for tolerant varieties : the importance of integrating "omics" techniques to phenotyping. / Zivy, Michel; Wienkoop, Stefanie; Renaut, Jenny; Pinheiro, Carla; Goulas, Estelle; Carpentier, Sebastien (Corresponding author).

In: Frontiers in Plant Science, Vol. 6, 2015, p. 448.

Publication: Contribution to journal › Review

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An improved protocol to study the plant cell wall proteome. / Printz, Bruno; Dos Santos Morais, Raphaël; Wienkoop, Stefanie; Sergeant, Kjell; Lutts, Stanley; Hausman, Jean-Francois (Corresponding author); Renaut, Jenny.

In: Frontiers in Plant Science, Vol. 6, 2015, p. 237.

Publication: Contribution to journal › Article

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Investigation of the Interaction of Endophytes and Poplar Plants in In Vitro Culture and Field Trials. / Hanak, Anne-Mette; Fragner, Lena; Kopp, Brigitte; Wawrosch, Christoph; Gössnitzer, Florian; Wanek, Wolfgang; Ewald, Dietrich; Ulrich, Kristina; Weckwerth, Wolfram.

In: Acta Horticulturae, Vol. 1099, 2015, p. 439-442.

Publication: Contribution to journal › Article

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Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana. / Nagler, Matthias; Nukarinen, Ella; Weckwerth, Wolfram; Nägele, Thomas (Corresponding author).

In: BMC Plant Biology, Vol. 15, 2015, p. 284.

Publication: Contribution to journal › Article

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SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. / Mair, Andrea; Pedrotti, Lorenzo; Wurzinger, Bernhard; Anrather, Dorothea; Simeunovic, Andrea; Weiste, Christoph; Valerio, Concetta; Dietrich, Katrin; Kirchler, Tobias; Nägele, Thomas; Vicente Carbajosa, Jesús; Hanson, Johannes; Baena-González, Elena; Chaban, Christina; Weckwerth, Wolfram; Dröge-Laser, Wolfgang; Teige, Markus (Corresponding author).

In: Elife, Vol. 4, 2015.

Publication: Contribution to journal › Article

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Metabolic phenotyping of in situ Arabidopsis thaliana populations. / Nagler, Matthias; Nägele, Thomas; Gilli, Christian; Fragner, Lena; Weckwerth, Wolfram.

2015.

Publication: Contribution to conference › Poster

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Molecular and Pyhsiological Characterization of Leaf Development in Theobroma cacao. / Fürtauer, Lisa; Engelmeier, Doris; Bachmann, Gert; Weckwerth, Wolfram.

2015.

Publication: Contribution to conference › Poster

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Challenges of Inversely Estimating Jacobian from Metabolomics Data. / Sun, Xiaoliang (Corresponding author); Länger, Bettina; Weckwerth, Wolfram.

In: Frontiers in bioengineering and biotechnology, Vol. 3, 2015, p. 188.

Publication: Contribution to journal › Article

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Physiological responses of N2-fixing legumes to water limitation. In: Legume Nitrogen Fixation in a Changing Environment. / Gonzalez, Esther M.; Larrainzar, Estíbaliz; Marino, D; Wienkoop, Stefanie; Gil-Quintana, Erena; Arrese-Igor, Cesar.

Legume Nitrogen Fixation in a Changing Environment: Achievements and Challenges. ed. / Saad Sulieman; Lam-Son Phan Tran. Springer International Publishing AG, 2015. p. 5-33.

Publication: Contribution to book › Chapter

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Chloroplast isolation and affinity chromatography for enrichment of low-abundant proteins in complex proteomes. / Bayer, Roman G; Stael, Simon; Teige, Markus.

In: Methods in Molecular Biology, Vol. 1295, 2015, p. 211-23.

Publication: Contribution to journal › Article

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Higher Plant Proteins of Cyanobacterial Origin : Are They or Are They Not Preferentially Targeted to Chloroplasts? / Bayer, Roman G.; Koestler, Tina; Jain, Arpit; Stael, Simon; Ebersberger, Ingo; Teige, Markus.

In: Molecular Plant, Vol. 7, No. 12, 12.2014, p. 1797-1800.

Publication: Contribution to journal › Editorial

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Timing Is Everything : Highly Specific and Transient Expression of a MAP Kinase Determines Auxin-Induced Leaf Venation Patterns in Arabidopsis. / Stanko, Vera; Giuliani, Concetta; Retzer, Katarzyna; Djamei, Armin; Wahl, Vanessa; Wurzinger, Bernhard; Wilson, Cathal; Heberle-Bors, Erwin; Teige, Markus; Kragler, Friedrich; Teige, Markus.

In: Molecular Plant, Vol. 7, No. 11, 11.2014, p. 1637-1652.

Publication: Contribution to journal › Article

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Drought stress provokes the down-regulation of methionine and ethylene biosynthesis pathways in Medicago truncatula roots and nodules. / Larrainzar, Estíbaliz; Molenaar, Johanna A; Wienkoop, Stefanie; Gil-Quintana, Erena; Alibert, Bénédicte; Limami, Anis M; Arrese-Igor, Cesar; González, Esther M.

In: Plant, Cell and Environment, Vol. 37, No. 9, 09.2014, p. 2051-63.

Publication: Contribution to journal › Article

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The battle with incomplete genome sequence information in comparative crop science : high throughput deNovo sequencing for improved cultivar specific protein isoform identification of Pisum sativum. / Turetschek, Reinhard; Desalegn, Getinet; Holzbach, Stephan; Lyon, David; Kaul, Hans-Peter; Wienkoop, Stefanie.

2014. Poster session presented at 1st INPPO World Congress, Hamburg, Germany.

Publication: Contribution to conference › Poster

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Gas Chromatography Coupled to Mass Spectrometry for Metabolomics Research. / Fragner, Lena; Furuhashi, Takeshi; Weckwerth, Wolfram.

Practical Gas Chromatography: A Comprehensive Reference. ed. / Katja Dettmer-Wilde; Werner Engewald. Springer-Verlag Berlin-Heidelberg, 2014. p. 783-797.

Publication: Contribution to book › Chapter

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Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. / Khan, Mamoona; Rozhon, Wilfried; Unterholzner, Simon Josef; Chen, Tingting; Eremina, Marina; Wurzinger, Bernhard; Bachmair, Andreas; Teige, Markus; Sieberer, Tobias; Isono, Erika; Poppenberger, Brigitte.

In: Nature Communications, Vol. 5, 4687, 08.2014.

Publication: Contribution to journal › Article

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Mathematical modeling reveals that metabolic feedback regulation of SnRK1 and hexokinase is sufficient to control sugar homeostasis from energy depletion to full recovery. / Nägele, Thomas; Weckwerth, Wolfram.

In: Frontiers in Plant Science, Vol. 5, 365, 28.07.2014, p. 365.

Publication: Contribution to journal › Article

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A Specialized Bird Pollination System with a Bellows Mechanism for Pollen Transfer and Staminal Food Body Rewards. / Dellinger, Agnes S.; Penneys, Darin S.; Städler, Yannick; Fragner, Lena; Weckwerth, Wolfram; Schönenberger, Jürg.

In: Current Biology, Vol. 24, No. 14, 21.07.2014, p. 1615-1619.

Publication: Contribution to journal › Article

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Exaggerated root respiration accounts for growth retardation in a starchless mutant of Arabidopsis thaliana. / Brauner, Katrin; Hörmiller, Imke; Nägele, Thomas; Heyer, Arnd G.

In: The Plant journal : for cell and molecular biology, Vol. 79, No. 1, 07.2014, p. 82-91.

Publication: Contribution to journal › Article

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A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms. / Valledor, Luis; Escandon, Monica; Meijon, Monica; Nukarinen, Ella; Jesus Canal, Maria; Weckwerth, Wolfram.

In: The Plant Journal, Vol. 79, No. 1, 07.2014, p. 173-180.

Publication: Contribution to journal › Article

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Field-omics-understanding large-scale molecular data from field crops. / Alexandersson, Erik; Jacobson, Dan; Vivier, Melane A.; Weckwerth, Wolfram; Andreasson, Erik (Corresponding author).

In: Frontiers in Plant Science, Vol. 5, 286, 20.06.2014.

Publication: Contribution to journal › Article

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Immune system priming in Pisum sativum caused by mutual impact of symbionts. / Turetschek, Reinhard; Desalegn, Getinet; Kaul, Hans-Peter; Wienkoop, Stefanie.

2014. Poster session presented at 20. Tagung der Austrian Society of Plant Biology (ATSPB), Lunz am See, Austria.

Publication: Contribution to conference › Poster

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mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data. / Doerfler, Hannes; Sun, Xiaoliang; Wang, Lei; Engelmeier, Doris; Lyon, David; Weckwerth, Wolfram.

In: PLoS ONE, Vol. 9, No. 5, 96188, 20.05.2014.

Publication: Contribution to journal › Article

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Boron nitride as desalting material in combination with phosphopeptide enrichment in shotgun proteomics. / Furuhashi, Takeshi; Nukarinen, Ella; Ota, Shigenori; Weckwerth, Wolfram.

In: Analytical Biochemistry, Vol. 452, 01.05.2014, p. 16-18.

Publication: Contribution to journal › Article

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Isolation of cellular membranes from lignin-producing tissues of Norway spruce and analysis of redox enzymes. / Kärkönen, Anna; Meisrimler, Claudia-Nicole; Takahashi, Junko; Väisänen, Enni; Laitinen, Teresa; Jiménez Barboza, Luis Alexis; Holmström, Sami; Salonvaara, Sadette; Wienkoop, Stefanie; Fagerstedt, Kurt V; Lüthje, Sabine.

In: Physiologia Plantarum, Vol. 152, No. 4, 15.04.2014, p. 599-616.

Publication: Contribution to journal › Article

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Metabolism and development - integration of micro computed tomography data and metabolite profiling reveals metabolic reprogramming from floral initiation to silique development. / Bellaire, Anke; Ischebeck, Till; Städler, Yannick; Weinhaeuser, Isabell; Mair, Andrea; Parameswaran, Sriram; Ito, Toshiro; Schönenberger, Jürg; Weckwerth, Wolfram.

In: New Phytologist, Vol. 202, No. 1, 04.2014, p. 322-335.

Publication: Contribution to journal › Article

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Poly(ADP-Ribose)Polymerase Activity Controls Plant Growth by Promoting Leaf Cell Number. / Schulz, Philipp; Jansseune, Karel; Degenkolbe, Thomas; Meret, Michael; Claeys, Hannes; Skirycz, Aleksandra; Teige, Markus; Willmitzer, Lothar; Hannah, Matthew A.

In: PLoS ONE, Vol. 9, No. 2, 90322, 28.02.2014.

Publication: Contribution to journal › Article

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Myo-inositol oxygenase is important for the removal of excess myo-inositol from syncytia induced by Heterodera schachtii in Arabidopsis roots. / Siddique, Shahid; Endres, Stefanie; Sobczak, Miroslaw; Radakovic, Zoran S.; Fragner, Lena; Grundler, Florian M.W.; Weckwerth, Wolfram; Tenhaken, Raimund; Bohlmann, Holger.

In: New Phytologist, Vol. 201, No. 2, 01.2014, p. 476-485.

Publication: Contribution to journal › Article

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Mass Western for absolute quantification of target proteins and considerations about the instrument of choice. / Lyon, David; Weckwerth, Wolfram; Wienkoop, Stefanie.

Plant Proteomics : Methods in Molecular Biology. Vol. 1072 Humana Press, Inc., 2014. p. 199-208 (Methods in Molecular Biology; Vol. 1072).

Publication: Contribution to book › Chapter

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From proteomics to systems biology : MAPA, MASS WESTERN, PROMEX, and COVAIN as a user-oriented platform. / Weckwerth, Wolfram; Wienkoop, Stefanie; Hoehenwarter, Wolfgang; Egelhofer, Volker; Sun, Xiaoliang.

In: Methods in Molecular Biology, Vol. 1072, 2014, p. 15-27.

Publication: Contribution to journal › Article

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Phosphorylation of Arabidopsis transketolase at Ser-428 provides a potential paradigm for metabolic control of chloroplast carbon metabolism. / Rocha, Agostinho G; Mehlmer, Norbert; Stael, Simon; Mair, Andrea; Parvin, Nargis; Chigri, Fatima; Teige, Markus; Vothknecht, Ute C.

In: Biochemical Journal, Vol. 458, 2014, p. 313-322.

Publication: Contribution to journal › Article

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