Publications


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Isolation of cellular membranes from lignin-producing tissues of Norway spruce and analysis of redox enzymes. / Kärkönen, Anna; Meisrimler, Claudia-Nicole; Takahashi, Junko; Väisänen, Enni; Laitinen, Teresa; Jiménez Barboza, Luis Alexis; Holmström, Sami; Salonvaara, Sadette; Wienkoop, Stefanie; Fagerstedt, Kurt V; Lüthje, Sabine.

In: Physiologia Plantarum, Vol. 152, No. 4, 15.04.2014, p. 599-616.

Publication: Contribution to journal › Article

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Metabolism and development - integration of micro computed tomography data and metabolite profiling reveals metabolic reprogramming from floral initiation to silique development. / Bellaire, Anke; Ischebeck, Till; Städler, Yannick; Weinhaeuser, Isabell; Mair, Andrea; Parameswaran, Sriram; Ito, Toshiro; Schönenberger, Jürg; Weckwerth, Wolfram.

In: New Phytologist, Vol. 202, No. 1, 04.2014, p. 322-335.

Publication: Contribution to journal › Article

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Poly(ADP-Ribose)Polymerase Activity Controls Plant Growth by Promoting Leaf Cell Number. / Schulz, Philipp; Jansseune, Karel; Degenkolbe, Thomas; Meret, Michael; Claeys, Hannes; Skirycz, Aleksandra; Teige, Markus; Willmitzer, Lothar; Hannah, Matthew A.

In: PLoS ONE, Vol. 9, No. 2, 90322, 28.02.2014.

Publication: Contribution to journal › Article

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Myo-inositol oxygenase is important for the removal of excess myo-inositol from syncytia induced by Heterodera schachtii in Arabidopsis roots. / Siddique, Shahid; Endres, Stefanie; Sobczak, Miroslaw; Radakovic, Zoran S.; Fragner, Lena; Grundler, Florian M.W.; Weckwerth, Wolfram; Tenhaken, Raimund; Bohlmann, Holger.

In: New Phytologist, Vol. 201, No. 2, 01.2014, p. 476-485.

Publication: Contribution to journal › Article

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Mass Western for absolute quantification of target proteins and considerations about the instrument of choice. / Lyon, David; Weckwerth, Wolfram; Wienkoop, Stefanie.

Plant Proteomics : Methods in Molecular Biology. Vol. 1072 Humana Press, Inc., 2014. p. 199-208 (Methods in Molecular Biology; Vol. 1072).

Publication: Contribution to book › Chapter

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From proteomics to systems biology : MAPA, MASS WESTERN, PROMEX, and COVAIN as a user-oriented platform. / Weckwerth, Wolfram; Wienkoop, Stefanie; Hoehenwarter, Wolfgang; Egelhofer, Volker; Sun, Xiaoliang.

In: Methods in Molecular Biology, Vol. 1072, 2014, p. 15-27.

Publication: Contribution to journal › Article

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Phosphorylation of Arabidopsis transketolase at Ser-428 provides a potential paradigm for metabolic control of chloroplast carbon metabolism. / Rocha, Agostinho G; Mehlmer, Norbert; Stael, Simon; Mair, Andrea; Parvin, Nargis; Chigri, Fatima; Teige, Markus; Vothknecht, Ute C.

In: Biochemical Journal, Vol. 458, 2014, p. 313-322.

Publication: Contribution to journal › Article

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Automated protein turnover calculations from 15N partial metabolic labeling LC/MS shotgun proteomics data. / Lyon, David; Castillejo, Maria Angeles; Staudinger, Christiana; Weckwerth, Wolfram; Wienkoop, Stefanie; Egelhofer, Volker.

In: PLoS ONE, Vol. 9, No. 4, 2014, p. e94692.

Publication: Contribution to journal › Article

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Draft Genome Sequence of the Growth-Promoting Endophyte Paenibacillus sp. P22, Isolated from Populus. / Hanak, Anne-Mette; Nagler, Matthias; Weinmaier, Thomas; Sun, Xiaoliang; Fragner, Lena; Schwab, Clarissa; Rattei, Thomas; Ulrich, Kristina; Ewald, Dietrich; Engel, Marion; Schloter, Michael; Bittner, Romana; Schleper, Christa; Weckwerth, Wolfram.

In: Genome Announcements, Vol. 2, No. 2, 2014, p. e00276-14.

Publication: Contribution to journal › Article

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The low energy signaling network. / Tomé, Filipa; Nägele, Thomas; Adamo, Mattia; Garg, Abhroop; Marco-Llorca, Carles; Nukarinen, Ella; Pedrotti, Lorenzo; Peviani, Alessia; Simeunovic, Andrea; Tatkiewicz, Anna; Tomar, Monika; Gamm, Magdalena.

In: Frontiers in Plant Science, Vol. 5, 2014, p. 353.

Publication: Contribution to journal › Article

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Solving the differential biochemical Jacobian from metabolomics covariance data. / Nägele, Thomas; Mair, Andrea; Sun, Xiaoliang; Fragner, Lena; Teige, Markus; Weckwerth, Wolfram.

In: PLoS ONE, Vol. 9, No. 4, 2014, p. e92299.

Publication: Contribution to journal › Article

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Linking metabolomics data to underlying metabolic regulation. / Nägele, Thomas.

In: Frontiers in Molecular Biosciences, Vol. 1, No. 22, 2014.

Publication: Contribution to journal › Review

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Medicago truncatula proteomics for systems biology: : Novel rapid shotgun LC-MS approach for relative quantification based on full-scan selective peptide extraction (Selpex). / Castillejo, M Angeles; Staudinger, Christiana; Egelhofer, Volker; Wienkoop, Stefanie.

Plant Proteomics: Methods and Protocols. Vol. 1072 Humana Press, Inc., 2014. p. 303-313 (Methods and Protocols; Vol. 1072).

Publication: Contribution to book › Chapter

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System Level Network Analysis of Nitrogen Starvation and Recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation. / Valledor, Luis; Furuhashi, Takeshi; Recuenco-Munoz, Luis; Wienkoop, Stefanie; Weckwerth, Wolfram (Corresponding author).

In: Biotechnology for Biofuels, Vol. 7, 2014, p. 171.

Publication: Contribution to journal › Article

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Ectopic overexpression of the cell wall invertase gene CIN1 leads to dehydration avoidance in tomato. / Albacete, Alfonso; Cantero-Navarro, Elena; Großinsky, Dominik K.; Arias, Cintia L.; Encarnation Balibrea, Maria; Bru, Roque; Fragner, Lena; Ghanem, Michael E.; de la Cruz Gonzalez, Maria; Hernandez, Jose A.; Martinez-Andujar, Cristina; van der Graaff, Eric; Weckwerth, Wolfram; Zellnig, Günther; Perez-Alfocea, Francisco (Corresponding author); Roitsch, Thomas.

In: Journal of Experimental Botany, 2014, p. eru448.

Publication: Contribution to journal › Article

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A tandem affinity purification tag of TGA2 for isolation of interacting proteins in Arabidopsis thaliana. / Stotz, Henrik U. (Corresponding author); Findling, Simone; Nukarinen, Ella Katariina; Weckwerth, Wolfram; Mueller, Martin J.; Berger, Susanne.

In: Plant Signaling & Behavior, Vol. 9, No. 10, 2014, p. e972794.

Publication: Contribution to journal › Article

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Tandem Metal-Oxide Affinity Chromatography for Enhanced Depth of Phosphoproteome Analysis. / Beckers, Gerold J M; Höhenwarter, Wolfgang; Röhrig, Horst; Conrath, Uwe; Weckwerth, Wolfram.

Methods in Molecular Biology: Plant Proteomics - Methods and Protocols. ed. / Jesus V. Jorrin-Novo; Setsuko Komatsu; Wolfram Weckwerth; Stefanie Wienkoop. Vol. 1072 Humana Press, 2014. p. 621-632.

Publication: Contribution to book › Chapter

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An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics. / Valledor, Luis; Weckwerth, Wolfram.

Plant Proteomics: Methods and Protocols - Methods in Molecular Biology. ed. / Jesus V. Jorrin-Novo; Setsuko Komatsu; Wolfram Weckwerth; Stefanie Wienkoop. Vol. 1072 Humana Press, 2014. p. 347-358.

Publication: Contribution to book › Chapter

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A workflow for mathematical modeling of subcellular metabolic pathways in leaf metabolism of Arabidopsis thaliana. / Nägele, Thomas; Weckwerth, Wolfram.

In: Frontiers in Plant Science, Vol. 4, 24.12.2013, p. 541.

Publication: Contribution to journal › Article

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Identification of putative new tomato allergens and differential interaction with IgEs of tomato allergic subjects. / Welter, Saskia; Lehmann, K.; Doelle, S.; Schwarz, D.; Weckwerth, W.; Scheler, Christian; Worm, Margitta; Franken, Philipp.

In: Clinical and Experimental Allergy, Vol. 43, No. 12, 12.2013, p. 1419-1427.

Publication: Contribution to journal › Article

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Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming. / Chaturvedi, Palak; Ischebeck, Till; Egelhofer, Volker; Lichtscheidl-Schultz, Irene; Weckwerth, Wolfram.

In: Journal of Proteome Research, Vol. 12, No. 11, 01.11.2013, p. 4892-4903.

Publication: Contribution to journal › Article

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Responses of antioxidant enzymes to cold and high light are not correlated to freezing tolerance in natural accessions of Arabidopsis thaliana. / Distelbarth, Heidrun; Nägele, Thomas; Heyer, Arnd G.

In: Plant Biology, Vol. 15, No. 6, 11.2013, p. 982-990.

Publication: Contribution to journal › Article

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INPPO Actions and Recognition as a Driving Force for Progress in Plant Proteomics : Change of Guard, INPPO Update, and Upcoming Activities. / Agrawal, Ganesh Kumar; Job, Dominique; Kieselbach, Thomas; Barkla, Bronwyn J.; Chen, Sixue; Deswal, Renu; Luethje, Sabine; Amalraj, Ramesh Sundar; Tanou, Georgia; Ndimba, Bongani Kaiser; Cramer, Rainer; Weckwerth, Wolfram; Wienkoop, Stefanie; Dunn, Michael J.; Kim, Sun Tae; Fukao, Yochiro; Yonekura, Masami; Zolla, Lello; Rohila, Jai Singh; Waditee-Sirisattha, Rungaroon; Masi, Antonio; Wang, Tai; Sarkar, Abhijit; Agrawal, Raj; Renaut, Jenny; Rakwal, Randeep.

In: Proteomics, Vol. 13, No. 21, 11.2013, p. 3093-3100.

Publication: Contribution to journal › Article

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The plasma membrane proteome of maize roots grown under low and high iron conditions. / Hopff, David; Wienkoop, Stefanie; Lüthje, Sabine.

In: Journal of Proteomics, Vol. 91, 08.10.2013, p. 605-18.

Publication: Contribution to journal › Article

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Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth. / Ischebeck, Till; Valledor, Luis; Lyon, David; Gingl, Stephanie; Nagler, Matthias; Meijon, Monica; Egelhofer, Volker; Weckwerth, Wolfram.

In: Molecular and Cellular Proteomics, Vol. 13, 27.09.2013, p. 295-310.

Publication: Contribution to journal › Article

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Rhizobium and mycorrhiza inoculation affect yield components in Pisum sativum L.. / Desalegn, Getinet; Turetschek, Reinhard; Klimek-Kopyra, Agnieszka; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at Tropentag 2013, Stuttgart-Hohenheim, Germany.

Publication: Contribution to conference › Poster

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Legume nitrogen nutrition-related strategies to cope with drought. / Staudinger, Christiana; Turetschek, Reinhard; Mehmeti-Tershani, Vlora; Castillejo Sanchez, Marie-Angeles; Lyon, David; Wienkoop, Stefanie.

2013. Poster session presented at Interdrought-IV Conference, Perth, Australia.

Publication: Contribution to conference › Poster

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Suffer and recover: How Medicago truncatula acclimates to varying water availability. / Staudinger, Christiana; Castillejo Sanchez, Marie-Angeles; Lyon, David; Egelhofer, Volker; Wienkoop, Stefanie.

2013. Poster session presented at 7th European Summer School, Brixen, Italy.

Publication: Contribution to conference › Poster

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Systemic cold stress adaptation of chlamydomonas reinhardtIII. / Valledor, L.; Furuhashi, T.; Hanak, A.-M.; Weckwerth, W.

In: Molecular and Cellular Proteomics, Vol. 12, No. 8, 01.08.2013, p. 2032-2047.

Publication: Contribution to journal › Article

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Eigenvalues of Jacobian matrices report on steps of metabolic reprogramming in a complex plant-environment interaction. / Nägele, Thomas; Weckwerth, Wolfram.

In: Applied Mathematics, Vol. 4, 08.2013, p. 44-49.

Publication: Contribution to journal › Article

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Dynamic Adaption of Metabolic Pathways during Germination and Growth of Lily Pollen Tubes after Inhibition of the Electron Transport Chain. / Obermeyer, Gerhard; Fragner, Lena; Lang, Veronika; Weckwerth, Wolfram.

In: Plant Physiology, Vol. 162, No. 4, 08.2013, p. 1822-1833.

Publication: Contribution to journal › Article

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Salt stress triggers phosphorylation of the Arabidopsis vacuolar K+ channel TPK1 by calcium-dependent protein kinases (CDPKs). / Latz, Andreas; Mehlmer, Norbert; Zapf, Simone; Mueller, Thomas D; Wurzinger, Bernhard; Pfister, Barbara; Csaszar, Edina; Hedrich, Rainer; Teige, Markus; Becker, Dirk.

In: Molecular Plant, Vol. 6, No. 4, 07.2013, p. 1274-1289.

Publication: Contribution to journal › Article

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Versatile redox chemistry complicates antioxidant capacity assessment : flavonoids as milieu-dependent anti- and pro-oxidants. / Chobot, Vladimir; Kubicova, Lenka; Bachmann, Gert; Hadacek, Franz.

In: International Journal of Molecular Sciences, Vol. 14, No. 6, 04.06.2013, p. 11830-41.

Publication: Contribution to journal › Article

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Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform. / Mari, Angela; Lyon, David; Fragner, Lena; Montoro, Paola; Piacente, Sonia (Corresponding author); Wienkoop, Stefanie; Egelhofer, Volker; Weckwerth, Wolfram (Corresponding author).

In: Metabolomics, Vol. 9, No. 3, 06.2013, p. 599-607.

Publication: Contribution to journal › Article

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Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism. / Doerfler, Hannes; Lyon, David; Nägele, Thomas; Sun, Xiaoliang; Fragner, Lena; Hadacek, Franz; Egelhofer, Volker; Weckwerth, Wolfram.

In: Metabolomics, Vol. 9, No. 3, 06.2013, p. 564-574.

Publication: Contribution to journal › Article

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Protein turnover calculations from partial metabolic labeling in Planta experiments. / Lyon, David; Castillejo Sanchez, Marie-Angeles; Staudinger, Christiana; Mehmeti, Vlora; Egelhofer, Volker; Wienkoop, Stefanie.

2013.

Publication: Contribution to conference › Poster

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Metabolomics and metabolite profiling. / Schuhmacher, Rainer; Krska, Rudolf; Weckwerth, Wolfram; Goodacre, Royston.

In: Analytical and Bioanalytical Chemistry, Vol. 405, No. 15, 06.2013, p. 5003-5004.

Publication: Contribution to journal › Editorial

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Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean. / Gil-Quintana, Erena; Larrainzar, Estíbaliz; Seminario, Amaia; Díaz-Leal, Juan Luis; Alamillo, Josefa M; Pineda, Manuel; Arrese-Igor, Cesar; Wienkoop, Stefanie; González, Esther M.

In: Journal of Experimental Botany, Vol. 64, No. 8, 11.04.2013, p. 2171-82.

Publication: Contribution to journal › Article

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Combined label-free quantification techniques to detect water deficit induced changes in the Medicago truncatula proteome. / Staudinger, Christiana; Castillejo Sanchez, Marie-Angeles; Mehmeti-Tershani, Vlora; Lyon, David; Egelhofer, Volker; Wienkoop, Stefanie.

2013. Poster session presented at Proteomic Forum 2013, Berlin, Germany.

Publication: Contribution to conference › Poster

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Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana. / Khan, Mamoona; Rozhon, Wilfried; Bigeard, Jean; Pflieger, Delphine; Husar, Sigrid; Pitzschke, Andrea; Teige, Markus; Jonak, Claudia; Hirt, Heribert; Poppenberger, Brigitte.

In: Journal of Biological Chemistry, Vol. 288, No. 11, 15.03.2013, p. 7519-7527.

Publication: Contribution to journal › Article

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Approximating subcellular organisation of carbohydrate metabolism during cold acclimation in different natural accessions of Arabidopsis thaliana. / Nägele, Thomas; Heyer, Arnd G. (Corresponding author).

In: New Phytologist, Vol. 198, No. 3, 14.03.2013, p. 777-787.

Publication: Contribution to journal › Article

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Rhizobial symbiosis-related effects on drought tolerance in Medicago truncatula. / Staudinger, Christiana; Mehmeti-Tershani, Vlora; Gil-Quintana, Erena; Gonzalez, Esther M.; Wienkoop, Stefanie.

2013. Poster session presented at Proteomic Forum 2013, Berlin, Germany.

Publication: Contribution to conference › Poster

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Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments. / Egelhofer, Volker; Hoehenwarter, Wolfgang; Lyon, David; Weckwerth, Wolfram; Wienkoop, Stefanie.

In: Nature Protocols, Vol. 8, No. 3, 28.02.2013, p. 595-601.

Publication: Contribution to journal › Article

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Nutritional priming studies of Pisum sativum cv. Sirius to Rhizobium and mycorrhiza inoculation. / Desalegn, Getinet; Turetschek, Reinhard; Castillejo Sanchez, Marie-Angeles; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at VIPCA Intern. Conf. Plant Diseases and Resistance Mechanisms, Vienna, Austria.

Publication: Contribution to conference › Poster

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Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography. / Hoehenwarter, Wolfgang; Thomas, Martin; Nukarinen, Ella; Egelhofer, Volker; Röhrig, Horst; Weckwerth, Wolfram; Conrath, Uwe; Beckers, Gerold J M.

In: Molecular and Cellular Proteomics, Vol. 12, No. 2, 01.02.2013, p. 369-80.

Publication: Contribution to journal › Article

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Nutritional priming studies of P. sativum cv. Sirius to Rhizobium and mycorrhiza inoculation. / Desalegn, Getinet; Turetschek, Reinhard; Castillejo Sanchez, Marie-Angeles; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at VIPCA Intern. Conf. Plant Diseases and Resistance Mechanisms, Vienna, Austria.

Publication: Contribution to conference › Poster

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Mitochondria are an early target of oxidative modifications in senescing legume nodules. / Metamoros, Manuel A. (Corresponding author); Fernández-García, Nieves; Wienkoop, Stefanie; Loscos, Jorge; Saiz, Ana; Becana, Manuel.

In: New Phytologist, Vol. 197, No. 3, 2013, p. 873-885.

Publication: Contribution to journal › Article

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Selective Reaction Monitoring. / Wienkoop, Stefanie.

Encyclopedia of Systems Biology. Springer New York LLC, 2013. p. 191.

Publication: Contribution to book › Entry for reference work

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Proteomics, Quantification-Unbiased and Target Approach. / Staudinger, Christiana; Wienkoop, Stefanie.

Encyclopedia of Systems Biology. Springer New York LLC, 2013. p. 1799-1800.

Publication: Contribution to book › Entry for reference work

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Plant Systems Biology. / Staudinger, Christiana; Wienkoop, Stefanie.

Encyclopedia of Systems Biology. Springer New York LLC, 2013. p. 1716-1717.

Publication: Contribution to book › Chapter

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