Publications


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Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism. / Doerfler, Hannes; Lyon, David; Nägele, Thomas; Sun, Xiaoliang; Fragner, Lena; Hadacek, Franz; Egelhofer, Volker; Weckwerth, Wolfram.

In: Metabolomics, Vol. 9, No. 3, 06.2013, p. 564-574.

Publication: Contribution to journal › Article

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Protein turnover calculations from partial metabolic labeling in Planta experiments. / Lyon, David; Castillejo Sanchez, Marie-Angeles; Staudinger, Christiana; Mehmeti, Vlora; Egelhofer, Volker; Wienkoop, Stefanie.

2013.

Publication: Contribution to conference › Poster

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Metabolomics and metabolite profiling. / Schuhmacher, Rainer; Krska, Rudolf; Weckwerth, Wolfram; Goodacre, Royston.

In: Analytical and Bioanalytical Chemistry, Vol. 405, No. 15, 06.2013, p. 5003-5004.

Publication: Contribution to journal › Editorial

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Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean. / Gil-Quintana, Erena; Larrainzar, Estíbaliz; Seminario, Amaia; Díaz-Leal, Juan Luis; Alamillo, Josefa M; Pineda, Manuel; Arrese-Igor, Cesar; Wienkoop, Stefanie; González, Esther M.

In: Journal of Experimental Botany, Vol. 64, No. 8, 11.04.2013, p. 2171-82.

Publication: Contribution to journal › Article

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Combined label-free quantification techniques to detect water deficit induced changes in the Medicago truncatula proteome. / Staudinger, Christiana; Castillejo Sanchez, Marie-Angeles; Mehmeti-Tershani, Vlora; Lyon, David; Egelhofer, Volker; Wienkoop, Stefanie.

2013. Poster session presented at Proteomic Forum 2013, Berlin, Germany.

Publication: Contribution to conference › Poster

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Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana. / Khan, Mamoona; Rozhon, Wilfried; Bigeard, Jean; Pflieger, Delphine; Husar, Sigrid; Pitzschke, Andrea; Teige, Markus; Jonak, Claudia; Hirt, Heribert; Poppenberger, Brigitte.

In: Journal of Biological Chemistry, Vol. 288, No. 11, 15.03.2013, p. 7519-7527.

Publication: Contribution to journal › Article

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Approximating subcellular organisation of carbohydrate metabolism during cold acclimation in different natural accessions of Arabidopsis thaliana. / Nägele, Thomas; Heyer, Arnd G. (Corresponding author).

In: New Phytologist, Vol. 198, No. 3, 14.03.2013, p. 777-787.

Publication: Contribution to journal › Article

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Rhizobial symbiosis-related effects on drought tolerance in Medicago truncatula. / Staudinger, Christiana; Mehmeti-Tershani, Vlora; Gil-Quintana, Erena; Gonzalez, Esther M.; Wienkoop, Stefanie.

2013. Poster session presented at Proteomic Forum 2013, Berlin, Germany.

Publication: Contribution to conference › Poster

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Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments. / Egelhofer, Volker; Hoehenwarter, Wolfgang; Lyon, David; Weckwerth, Wolfram; Wienkoop, Stefanie.

In: Nature Protocols, Vol. 8, No. 3, 28.02.2013, p. 595-601.

Publication: Contribution to journal › Article

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Nutritional priming studies of Pisum sativum cv. Sirius to Rhizobium and mycorrhiza inoculation. / Desalegn, Getinet; Turetschek, Reinhard; Castillejo Sanchez, Marie-Angeles; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at VIPCA Intern. Conf. Plant Diseases and Resistance Mechanisms, Vienna, Austria.

Publication: Contribution to conference › Poster

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Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography. / Hoehenwarter, Wolfgang; Thomas, Martin; Nukarinen, Ella; Egelhofer, Volker; Röhrig, Horst; Weckwerth, Wolfram; Conrath, Uwe; Beckers, Gerold J M.

In: Molecular and Cellular Proteomics, Vol. 12, No. 2, 01.02.2013, p. 369-80.

Publication: Contribution to journal › Article

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Nutritional priming studies of P. sativum cv. Sirius to Rhizobium and mycorrhiza inoculation. / Desalegn, Getinet; Turetschek, Reinhard; Castillejo Sanchez, Marie-Angeles; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at VIPCA Intern. Conf. Plant Diseases and Resistance Mechanisms, Vienna, Austria.

Publication: Contribution to conference › Poster

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Mitochondria are an early target of oxidative modifications in senescing legume nodules. / Metamoros, Manuel A. (Corresponding author); Fernández-García, Nieves; Wienkoop, Stefanie; Loscos, Jorge; Saiz, Ana; Becana, Manuel.

In: New Phytologist, Vol. 197, No. 3, 2013, p. 873-885.

Publication: Contribution to journal › Article

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Selective Reaction Monitoring. / Wienkoop, Stefanie.

Encyclopedia of Systems Biology. Springer New York LLC, 2013. p. 191.

Publication: Contribution to book › Entry for reference work

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Proteomics, Quantification-Unbiased and Target Approach. / Staudinger, Christiana; Wienkoop, Stefanie.

Encyclopedia of Systems Biology. Springer New York LLC, 2013. p. 1799-1800.

Publication: Contribution to book › Entry for reference work

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Plant Systems Biology. / Staudinger, Christiana; Wienkoop, Stefanie.

Encyclopedia of Systems Biology. Springer New York LLC, 2013. p. 1716-1717.

Publication: Contribution to book › Chapter

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Medicago truncatula root and shoot Metabolomics : Protocol for the investigation of the primary carbon and nitrogen metabolism based on GC-MS. / Mehmeti, Vlora; Fragner, Lena; Wienkoop, Stefanie.

The Handbook of Plant Metabolomics: Metabolite Profiling and Networking. Wiley - V C H, 2013. p. 111-123 6.

Publication: Contribution to book › Chapter

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Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. / Poulsen, Morten; Schwab, Clarissa; Jensen, Bent Borg; Engberg, Ricarda M; Spang, Anja; Canibe, Nuria; Hojberg, Ole; Milinovich, Gabriel John; Fragner, Lena; Schleper, Christa; Weckwerth, Wolfram; Lund, Peter; Schramm, Andreas; Urich, Tim.

In: Nature Communications, Vol. 4, 1428, 2013.

Publication: Contribution to journal › Article

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Pepino mosaic virus infection of tomato affects allergen expression, but not the allergenic potential of fruits. / Welter, Saskia; Dölle, Sabine; Lehmann, Karola; Schwarz, Dietmar; Weckwerth, Wolfram; Worm, Margitta; Franken, Philipp.

In: PLoS ONE, Vol. 8, No. 6, 2013, p. e65116.

Publication: Contribution to journal › Article

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Shaping the pathogen response by protein kinase triggered oxidative burst. / Mair, Andrea; Teige, Markus.

In: New Phytologist, Vol. 196, No. 1, 10.2012, p. 4-6.

Publication: Contribution to journal › Article

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Identification of a metabolic bottleneck for cold acclimation in Arabidopsis thaliana. / Nägele, Thomas; Stutz, Simon; Hoermiller, Imke I.; Heyer, Arnd G.; Nägele, Thomas.

In: The Plant Journal, Vol. 72, No. 1, 10.2012, p. 102-114.

Publication: Contribution to journal › Article

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Proteomic characterisation of microsymbiont-dependent changes in Medicago truncatula roots. / Staudinger, Christiana; Turetschek, Reinhard; Gil-Quintana, Erena; Gonzalez, Esther M.; Wienkoop, Stefanie.

2012. Poster session presented at 10th European nitrogen fixation conference, München, Germany.

Publication: Contribution to conference › Poster

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Molecular Changes in the Metabolome of Medicago truncatula Induced by Short Term Salt and Drought Stress. / Mehmeti-Tershani, Vlora (Corresponding author); Staudinger, Christiana; Wienkoop, Stefanie.

2012. Poster session presented at Metabolomics 2012, Washington DC, United States.

Publication: Contribution to conference › Poster

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The formation, function and fate of protein storage compartments in seeds. / Ibl, Verena; Stoger, Eva.

In: Protoplasma, Vol. 249, No. 2, 04.2012, p. 379-92.

Publication: Contribution to journal › Article

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Organellar signalling. Preface. / Teige, Markus.

In: Journal of Experimental Botany, Vol. 63, No. 4, 02.2012, p. 1523-4.

Publication: Contribution to journal › Article

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Chloroplast-localized protein kinases : a step forward towards a complete inventory. / Bayer, Roman G; Stael, Simon; Rocha, Agostinho G; Mair, Andrea; Vothknecht, Ute C; Teige, Markus.

In: Journal of Experimental Botany, Vol. 63, No. 4, 02.2012, p. 1713-23.

Publication: Contribution to journal › Article

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Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. / Ibl, Verena; Csaszar, Edina; Schlager, Nicole; Neubert, Susanne; Spitzer, Christoph; Hauser, Marie-Theres.

In: Journal of Proteome Research, Vol. 11, No. 1, 01.01.2012, p. 397-411.

Publication: Contribution to journal › Article

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The developmental trajectory of Arabidopsis flowers. / Bellaire, Anke; Ischebeck, Till; Weingartner, Isabell; Städler, Yannick; Schönenberger, Jürg; Weckwerth, Wolfram.

International Conference on Arabidopsis Research. Wien, 3. bis 7. Juli 2012. Abstract book. Unknown publisher, 2012.

Publication: Contribution to book › Contribution to proceedings

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Combining microdilution with MicroResp (TM): Microbial substrate utilization, antimicrobial susceptibility and respiration. / Drage, Sigrid; Engelmeier, Doris; Bachmann, Gert; Sessitsch, Angela; Mitter, Birgit; Hadacek, Franz (Corresponding author).

In: Journal of Microbiological Methods, Vol. 88, No. 3, 2012, p. 399-412.

Publication: Contribution to journal › Article

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A toolset of aequorin expression vectors for in planta studies of subcellular calcium concentrations in Arabidopsis thaliana. / Mehlmer, Norbert; Parvin, Nargis; Hurst, Charlotte H.; Knight, Marc R.; Teige, Markus; Vothknecht, Ute.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1751-1761.

Publication: Contribution to journal › Article

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Plant organellar calcium signalling: an emerging field. / Stael, Simon Lander; Teige, Markus; Wurzinger, Bernhard; Mair, Andrea; Mehlmer, Norbert; Vothknecht, Ute.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1525-1542.

Publication: Contribution to journal › Article

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Cross-talk between calcium signalling and protein phosphorylation at the thylakoid. / Stael, Simon Lander; Rocha, Agostinho G.; Anrather, Dorothea; Vothknecht, Ute; Teige, Markus.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1725-1733.

Publication: Contribution to journal › Article

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Elektrophoretische Analysen von Proteinen in der Population von Artemisia pancicii am Bisamberg, Niederösterreich. / Qiu, Yangfan; Maier, Rudolf (Corresponding author); Weckwerth, Wolfram.

In: Verhandlungen der Zoologisch-Botanischen-Gesellschaft in Österreich, Vol. 148, 2012, p. 23-35.

Publication: Contribution to journal › Article

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Oxidative stress is a consequence, not a cause, of aluminum toxicity in the forage legume Lotus corniculatus. / Navascues, Joaquin; Perez-Rontome, Carmen; Sanchez, Diego H.; Staudinger, Christiana; Wienkoop, Stefanie; Rellan-Alvarez, Ruben; Becana, Manuel (Corresponding author).

In: New Phytologist, Vol. 193, No. 3, 2012, p. 625-636.

Publication: Contribution to journal › Article

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Neurotoxin localization to ectodermal gland cells uncovers an alternative mechanism of venom delivery in sea anemones. / Moran, Yehu (Corresponding author); Genikhovich, Grigory; Gordon, Dalia; Wienkoop, Stefanie; Zenkert, Claudia; Özbek, Suat; Technau, Ulrich; Gurevitz, Michael.

In: Proceedings of the Royal Society B: Biological Sciences, Vol. 279, No. 1732, 2012, p. 1351-1358.

Publication: Contribution to journal › Article

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Possible role of nutritional priming for early salt and drought stress responses in Medicago truncatula. / Staudinger, Christiana; Mehmeti-Tershani, Vlora; Lyon, David; Egelhofer, Volker; Wienkoop, Stefanie (Corresponding author).

In: Frontiers in Plant Science, Vol. 3, No. 285, 2012.

Publication: Contribution to journal › Article

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ProMEX - a mass spectral reference database for plant proteomics. / Wienkoop, Stefanie; Staudinger, Christiana; Höhenwarter, Wolfgang; Weckwerth, Wolfram; Egelhofer, Volker (Corresponding author).

In: Frontiers in Plant Science, Vol. 3, No. 125, 2012.

Publication: Contribution to journal › Article

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COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data. / Sun, Xiaoliang; Weckwerth, Wolfram (Corresponding author).

In: Metabolomics, Vol. 8, No. 1 suppl, 2012, p. 81-93.

Publication: Contribution to journal › Article

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Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects. / Agrawal, Ganesh Kumar (Corresponding author); Sarkar, Abhijit; Agrawal, Raj; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Proteomics, Vol. 12, No. 3, 2012, p. 359-368.

Publication: Contribution to journal › Article

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The different proteomes of Chlamydomonas reinhardtii. / Valledor, Luis; Recuenco-Munoz, Luis; Egelhofer, Volker; Wienkoop, Stefanie; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteomics, Vol. 75, No. 18, 2012, p. 5883-5887.

Publication: Contribution to journal › Article

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The developmental trajectory of Arabidopsis flowers. / Bellaire, Anke; Ischebeck, Till; Weingartner, Isabell; Städler, Yannick; Schönenberger, Jürg; Weckwerth, Wolfram.

2012. Poster session presented at International Conference on Arabidopsis Research, Wien, Austria.

Publication: Contribution to conference › Poster

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Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms. / Schulz, Philipp; Neukermans, Jenny; Van der Kelen, Katrien; Mühlenbock, Per; Van Breusegem, Frank; Noctor, Graham; Teige, Markus; Metzlaff, Michael; Hannah, Matthew A.

In: PLoS ONE, Vol. 7, No. 5, 2012, p. e37287.

Publication: Contribution to journal › Article

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Mathematical modeling of plant metabolism-from reconstruction to prediction. / Nägele, Thomas; Weckwerth, Wolfram.

In: Metabolites, Vol. 2, No. 3, 2012, p. 553-66.

Publication: Contribution to journal › Article

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isAt - in situ Arabidopsis thaliana. / Nagler, Matthias; Weckwerth, Wolfram.

2012.

Publication: Contribution to conference › Poster

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A systems biology approach for the analysis of carbohydrate dynamics during acclimation to low temperature in Arabidopsis thaliana. / Nägele, Thomas; Kandel, Benjamin A.; Frana, Sabine; Meissner, Meike; Heyer, Arnd G.; Nägele, Thomas.

In: The FEBS Journal, Vol. 278, No. 3, 02.2011, p. 506-518.

Publication: Contribution to journal › Article

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Cross-talk of calcium-dependent protein kinase and MAP kinase signaling. / Wurzinger, Bernhard; Mair, Andrea; Pfister, Barbara; Teige, Markus (Corresponding author).

In: Plant Signaling & Behavior, Vol. 6, No. 1, 2011, p. 8-12.

Publication: Contribution to journal › Review

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Proteomics and metabolomics for systems biology in Legumes. / Wienkoop, Stefanie.

Genetics, Genomics and Breeding of Cool Season Grain Legumes. ed. / Marcelino Perez de la Vega; Ana Maria Torres; Jose Ignacio Cubero. Unknown publisher, 2011.

Publication: Contribution to book › Chapter

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MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. / Joshi, Hiren J.; Hirsch-Hoffmann, Matthias; Bärenfaller, Katja; Gruissem, Wilhelm; Baginsky, Sacha; Schmidt, Robert; Schulze, Waltraud X.; Sun, Qi; van Wijk, Klaas; Egelhofer, Volker; Wienkoop, Stefanie; Weckwerth, Wolfram; Heazlewood, Joshua L. (Corresponding author).

In: Plant Physiology, Vol. 155, 2011, p. 259-270.

Publication: Contribution to journal › Article

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Impact of arbuscular mycorrhizal fungi on the allergenic potential of tomato. / Welter, Saskia; George, Eckhard; Franken, Philipp; Lehmann, Karola; Weckwerth, Wolfram; Dölle, Sabine; Worm, Margitta.

In: Mycorrhiza, Vol. 21, No. 5, 2011, p. 341-349.

Publication: Contribution to journal › Article

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Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics. / Höhenwarter, Wolfgang (Corresponding author); Chen, Yanmei; Recuenco-Munoz, Luis; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Amino Acids, Vol. 41, No. 2, 2011, p. 329-341.

Publication: Contribution to journal › Article

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