Publications


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Combining microdilution with MicroResp (TM): Microbial substrate utilization, antimicrobial susceptibility and respiration. / Drage, Sigrid; Engelmeier, Doris; Bachmann, Gert; Sessitsch, Angela; Mitter, Birgit; Hadacek, Franz (Corresponding author).

In: Journal of Microbiological Methods, Vol. 88, No. 3, 2012, p. 399-412.

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A toolset of aequorin expression vectors for in planta studies of subcellular calcium concentrations in Arabidopsis thaliana. / Mehlmer, Norbert; Parvin, Nargis; Hurst, Charlotte H.; Knight, Marc R.; Teige, Markus; Vothknecht, Ute.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1751-1761.

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Plant organellar calcium signalling: an emerging field. / Stael, Simon Lander; Teige, Markus; Wurzinger, Bernhard; Mair, Andrea; Mehlmer, Norbert; Vothknecht, Ute.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1525-1542.

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Cross-talk between calcium signalling and protein phosphorylation at the thylakoid. / Stael, Simon Lander; Rocha, Agostinho G.; Anrather, Dorothea; Vothknecht, Ute; Teige, Markus.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1725-1733.

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Elektrophoretische Analysen von Proteinen in der Population von Artemisia pancicii am Bisamberg, Niederösterreich. / Qiu, Yangfan; Maier, Rudolf (Corresponding author); Weckwerth, Wolfram.

In: Verhandlungen der Zoologisch-Botanischen-Gesellschaft in Österreich, Vol. 148, 2012, p. 23-35.

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Oxidative stress is a consequence, not a cause, of aluminum toxicity in the forage legume Lotus corniculatus. / Navascues, Joaquin; Perez-Rontome, Carmen; Sanchez, Diego H.; Staudinger, Christiana; Wienkoop, Stefanie; Rellan-Alvarez, Ruben; Becana, Manuel (Corresponding author).

In: New Phytologist, Vol. 193, No. 3, 2012, p. 625-636.

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Neurotoxin localization to ectodermal gland cells uncovers an alternative mechanism of venom delivery in sea anemones. / Moran, Yehu (Corresponding author); Genikhovich, Grigory; Gordon, Dalia; Wienkoop, Stefanie; Zenkert, Claudia; Özbek, Suat; Technau, Ulrich; Gurevitz, Michael.

In: Proceedings of the Royal Society B: Biological Sciences, Vol. 279, No. 1732, 2012, p. 1351-1358.

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Possible role of nutritional priming for early salt and drought stress responses in Medicago truncatula. / Staudinger, Christiana; Mehmeti-Tershani, Vlora; Lyon, David; Egelhofer, Volker; Wienkoop, Stefanie (Corresponding author).

In: Frontiers in Plant Science, Vol. 3, No. 285, 2012.

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ProMEX - a mass spectral reference database for plant proteomics. / Wienkoop, Stefanie; Staudinger, Christiana; Höhenwarter, Wolfgang; Weckwerth, Wolfram; Egelhofer, Volker (Corresponding author).

In: Frontiers in Plant Science, Vol. 3, No. 125, 2012.

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COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data. / Sun, Xiaoliang; Weckwerth, Wolfram (Corresponding author).

In: Metabolomics, Vol. 8, No. 1 suppl, 2012, p. 81-93.

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Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects. / Agrawal, Ganesh Kumar (Corresponding author); Sarkar, Abhijit; Agrawal, Raj; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Proteomics, Vol. 12, No. 3, 2012, p. 359-368.

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The different proteomes of Chlamydomonas reinhardtii. / Valledor, Luis; Recuenco-Munoz, Luis; Egelhofer, Volker; Wienkoop, Stefanie; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteomics, Vol. 75, No. 18, 2012, p. 5883-5887.

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The developmental trajectory of Arabidopsis flowers. / Bellaire, Anke; Ischebeck, Till; Weingartner, Isabell; Städler, Yannick; Schönenberger, Jürg; Weckwerth, Wolfram.

2012. Poster session presented at International Conference on Arabidopsis Research, Wien, Austria.

Publication: Contribution to conference › Poster

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Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms. / Schulz, Philipp; Neukermans, Jenny; Van der Kelen, Katrien; Mühlenbock, Per; Van Breusegem, Frank; Noctor, Graham; Teige, Markus; Metzlaff, Michael; Hannah, Matthew A.

In: PLoS ONE, Vol. 7, No. 5, 2012, p. e37287.

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Mathematical modeling of plant metabolism-from reconstruction to prediction. / Nägele, Thomas; Weckwerth, Wolfram.

In: Metabolites, Vol. 2, No. 3, 2012, p. 553-66.

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isAt - in situ Arabidopsis thaliana. / Nagler, Matthias; Weckwerth, Wolfram.

2012.

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A systems biology approach for the analysis of carbohydrate dynamics during acclimation to low temperature in Arabidopsis thaliana. / Nägele, Thomas; Kandel, Benjamin A.; Frana, Sabine; Meissner, Meike; Heyer, Arnd G.; Nägele, Thomas.

In: The FEBS Journal, Vol. 278, No. 3, 02.2011, p. 506-518.

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Cross-talk of calcium-dependent protein kinase and MAP kinase signaling. / Wurzinger, Bernhard; Mair, Andrea; Pfister, Barbara; Teige, Markus (Corresponding author).

In: Plant Signaling & Behavior, Vol. 6, No. 1, 2011, p. 8-12.

Publication: Contribution to journal › Review

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Proteomics and metabolomics for systems biology in Legumes. / Wienkoop, Stefanie.

Genetics, Genomics and Breeding of Cool Season Grain Legumes. ed. / Marcelino Perez de la Vega; Ana Maria Torres; Jose Ignacio Cubero. Unknown publisher, 2011.

Publication: Contribution to book › Chapter

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MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. / Joshi, Hiren J.; Hirsch-Hoffmann, Matthias; Bärenfaller, Katja; Gruissem, Wilhelm; Baginsky, Sacha; Schmidt, Robert; Schulze, Waltraud X.; Sun, Qi; van Wijk, Klaas; Egelhofer, Volker; Wienkoop, Stefanie; Weckwerth, Wolfram; Heazlewood, Joshua L. (Corresponding author).

In: Plant Physiology, Vol. 155, 2011, p. 259-270.

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Impact of arbuscular mycorrhizal fungi on the allergenic potential of tomato. / Welter, Saskia; George, Eckhard; Franken, Philipp; Lehmann, Karola; Weckwerth, Wolfram; Dölle, Sabine; Worm, Margitta.

In: Mycorrhiza, Vol. 21, No. 5, 2011, p. 341-349.

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Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics. / Höhenwarter, Wolfgang (Corresponding author); Chen, Yanmei; Recuenco-Munoz, Luis; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Amino Acids, Vol. 41, No. 2, 2011, p. 329-341.

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HORMESIS AND A CHEMICAL RAISON D’ÊTRE FOR SECONDARY PLANT METABOLITES. / Hadacek, Franz; Bachmann, Gert; Engelmeier, Doris; Chobot, Vladimir.

In: Dose-Response: assessing the nature, mechanisms, and implications of dose-response relationships, Vol. 9, No. 1, 2011, p. 79-116.

Publication: Contribution to journal › Article

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Metabolite changes with induction of Cuscuta haustorium and translocation from host plants. / Furuhashi, Takeshi (Corresponding author); Fragner, Lena; Furuhashi, Katsuhisa; Valledor, Luis; Sun, Xiaoliang; Weckwerth, Wolfram.

In: Journal of Plant Interactions, 2011.

Publication: Contribution to journal › Article

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Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). / Dunn, Michael J.; Weckwerth, Wolfram.

In: Proteomics, Vol. 11, No. 9, 2011, p. 1559-1568.

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AN OPTIMIZED METHOD FOR THE ISOLATION OF NUCLEI FROM CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE). / Winck, Flavia Vischi; Kwasniewski, Miroslaw; Wienkoop, Stefanie (Corresponding author); Müller-Röber, Bernd.

In: Journal of Phycology: an international journal of algal research, Vol. 47, No. 2, 2011, p. 333-340.

Publication: Contribution to journal › Article

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The parasitic mechanism of the holostemparasitic plant Cuscuta. / Furuhashi, Takeshi (Corresponding author); Furuhashi, Katsuhisa; Weckwerth, Wolfram.

In: Journal of Plant Interactions, Vol. 6, No. 4, 2011, p. 1-13.

Publication: Contribution to journal › Article

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Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. / Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteomics, Vol. 75, No. 1, 2011, p. 284-305.

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Tomato allergy: impact of genotype and environmental factors on the biological response. / Dölle, Sabine; Schwarz, Dietmar; Lehmann, Karola; Weckwerth, Wolfram; George, Eckhard; Worm, Margitta (Corresponding author); Franken, Philipp.

In: Journal of the Science of Food and Agriculture, Vol. 91, No. 12, 2011, p. 2234-2240.

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Expression of root glutamate dehydrogenase genes in tobacco plants subjected to boron deprivation. / Beato, Victor M.; Navarro-Gochicoa, Teresa M.; Rexach, Jesus; Herrera-Rodriguez, Begona M.; Camacho-Christobal, Juan J.; Kempa, Stefan; Weckwerth, Wolfram (Corresponding author); Gonzales-Fontes, Ausgustin.

In: Plant Physiology and Biochemistry, Vol. 49, No. 11, 2011, p. 1350-1354.

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Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010. / Weckwerth, Wolfram.

In: Journal of Proteomics, Vol. 75, No. 1, 2011, p. 4-17.

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MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. / Höhenwarter, Wolfgang (Corresponding author); Larhlimi, Abdelhalim; Hummel, Jan; Egelhofer, Volker; Selbig, Joachim; van Dongen, Joost T.; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Journal of Proteome Research, Vol. 10, No. 7, 2011, p. 2979-2991.

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Unpredictability of metabolism-the key role of metabolomics science in combination with next-generation genome sequencing. / Weckwerth, Wolfram (Corresponding author).

In: Analytical and Bioanalytical Chemistry, Vol. 400, 2011, p. 1967-1978.

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A Cloud Framework for High Throughput Biological Data Processing. / Köhler, Martin (Corresponding author); Kaniovskyi, Yuriy; Benkner, Siegfried; Egelhofer, Volker; Weckwerth, Wolfram.

In: Pos - Proceedings of Science, 2011.

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Mining the soluble chloroplast proteome by affinity chromatography. / Bayer, Roman; Stael, Simon Lander; Csaszar, Edina; Teige, Markus (Corresponding author).

In: Proteomics, Vol. 11, No. 7, 2011, p. 1287-1299.

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Protein N-acylation overrides differing targeting signals. / Stael, Simon Lander; Bayer, Roman; Mehlmer, Norbert; Teige, Markus (Corresponding author).

In: FEBS Letters, Vol. 585, No. 3, 2011, p. 517-522.

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Arabidopsis calcium-binding mitochondrial carrier proteins as potential facilitators of mitochondrial ATP-import and plastid SAM-import. / Stael, Simon Lander; Rocha, Agostinho G.; Robinson, Alan; Kmiecik, Przemyslaw; Vothknecht, Ute; Teige, Markus (Corresponding author).

In: FEBS Letters, Vol. 585, No. 24, 2011, p. 3935-3940.

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The Model Plant Arabidopsis thaliana for Metabolomic and Proteomic Phenotyping. / Staudinger, Christiana; Mehmeti-Tershani, Vlora; Weckwerth, Wolfram; Wienkoop, Stefanie.

2011. Poster session presented at ICAR 2011 - 22nd International Conference on Arabidopsis Research, Wisconsin, United States.

Publication: Contribution to conference › Poster

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Comparative Metabolomics of Medicago truncatula roots and shoots under salt stress and recovery. / Mehmeti-Tershani, Vlora; Staudinger, Christiana; Weckwerth, Wolfram; Wienkoop, Stefanie.

2010. Poster session presented at 9th European Nitrogen Fixation Conference, Geneva, Switzerland.

Publication: Contribution to conference › Poster

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Mathematical Modeling of the Central Carbohydrate Metabolism in Arabidopsis Reveals a Substantial Regulatory Influence of Vacuolar Invertase on Whole Plant Carbon Metabolism. / Nägele, Thomas; Henkel, Sebastian; Hoermiller, Imke; Sauter, Thomas; Sawodny, Oliver; Ederer, Michael; Heyer, Arnd G.; Nägele, Thomas.

In: Plant Physiology, Vol. 153, No. 1, 05.2010, p. 260-272.

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A proteomics toolbox. / Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Analytica PRO – Das offizielle Messe-Magazin, Vol. 1, No. 2010, 2010, p. 22-25.

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Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Methods in Molecular Biology - "Bioinformatics for Comparative Proteomics". / May, Patrick; Christian, Niels; Ebenhöh, Oliver; Weckwerth, Wolfram; Walther, Dirk.

Bioinformatics for Comparative Proteomics. ed. / Cathy H. Wu; Chuming Chen. Springer, 2010. p. 341-364 (Methods in Molecular Biology).

Publication: Contribution to book › Chapter

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Contribution of carbon fixed by Rubisco and PEPC to phloem export in the Crassulacean acid metabolism plant Kalanchoë daigremontiana. / Wild, Birgit (Corresponding author); Wanek, Wolfgang; Postl, Wolfgang; Richter, Andreas.

In: Journal of Experimental Botany, Vol. 61, No. 5, 2010, p. 1375-1383.

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Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. / Chen, Yanmei; Höhenwarter, Wolfgang; Weckwerth, Wolfram (Corresponding author).

In: The Plant Journal, Vol. 63, No. 1, 2010, p. 1-17.

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The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors. / Kirchler, Tobias; Briesemeister, Sebastian; Singer, Miriam; Schütze, Katia; Keinath, Melanie; Kohlbacher, Oliver; Vicente-Carbajosa, Jesus; Teige, Markus; Harter, Klaus; Chaban, Christina (Corresponding author).

In: European Journal of Cell Biology, Vol. 89, No. 2-3, 2010, p. 175-183.

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Roles of Arabidopsis patatin-related phospholipases a in root development are related to auxin responses and phosphate deficiency. / Rietz, Steffen; Dermendjiev, Georgi-Atanasov; Oppermann, Esther; Tafesse, Fikadu Getah; Effendi, Yunus; Holk, André; Parker, Jane E.; Teige, Markus; Scherer, Günther F. E. (Corresponding author).

In: Molecular Plant, Vol. 3, No. 3, 2010, p. 524-538.

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Targeted Proteomics for Chlamydomonas reinhardtii combines mass western, subcellular protein fractionation, metabolomics and metabolic flux analysis. / Wienkoop, Stefanie; Weiß, Julia; May, Patrick; Kempa, Stefan; Irgang, Susann; Recuenco-Munoz, Luis; Pietzke, Matthias; Schwemmer, Thorsten; Rupprecht, Jens; Egelhofer, Volker; Weckwerth, Wolfram (Corresponding author).

In: Molecular BioSystems, Vol. 6, 2010, p. 1018-1031.

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Metabolomics - an integral technique in systems biology. / Weckwerth, Wolfram.

In: Bioanalysis, Vol. 2, No. 4, 2010, p. 829-836.

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The Ca(2+)-dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis. / Mehlmer, Norbert; Wurzinger, Bernhard; Stael, Simon Lander; Hofmann Rodrigues, Daniela; Csaszar, Edina; Pfister, Barbara; Bayer, Roman; Teige, Markus (Corresponding author).

In: The Plant Journal, Vol. 63, 2010, p. 484-498.

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Kinetic analysis of 14-3-3-inhibited arabidopsis thaliana nitrate reductase. / Lambeck, Iris; Chi, Jean-Chih; Krizowski, Sabrina; Mueller, Stefan; Mehlmer, Norbert; Teige, Markus; Fischer, Katrin; Schwarz, Guenter (Corresponding author).

In: Biochemistry, No. 37, 2010, p. 8177-8186.

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