Publications


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HORMESIS AND A CHEMICAL RAISON D’ÊTRE FOR SECONDARY PLANT METABOLITES. / Hadacek, Franz; Bachmann, Gert; Engelmeier, Doris; Chobot, Vladimir.

In: Dose-Response: assessing the nature, mechanisms, and implications of dose-response relationships, Vol. 9, No. 1, 2011, p. 79-116.

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Metabolite changes with induction of Cuscuta haustorium and translocation from host plants. / Furuhashi, Takeshi (Corresponding author); Fragner, Lena; Furuhashi, Katsuhisa; Valledor, Luis; Sun, Xiaoliang; Weckwerth, Wolfram.

In: Journal of Plant Interactions, 2011.

Publication: Contribution to journal › Article

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Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). / Dunn, Michael J.; Weckwerth, Wolfram.

In: Proteomics, Vol. 11, No. 9, 2011, p. 1559-1568.

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AN OPTIMIZED METHOD FOR THE ISOLATION OF NUCLEI FROM CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE). / Winck, Flavia Vischi; Kwasniewski, Miroslaw; Wienkoop, Stefanie (Corresponding author); Müller-Röber, Bernd.

In: Journal of Phycology: an international journal of algal research, Vol. 47, No. 2, 2011, p. 333-340.

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The parasitic mechanism of the holostemparasitic plant Cuscuta. / Furuhashi, Takeshi (Corresponding author); Furuhashi, Katsuhisa; Weckwerth, Wolfram.

In: Journal of Plant Interactions, Vol. 6, No. 4, 2011, p. 1-13.

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Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. / Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteomics, Vol. 75, No. 1, 2011, p. 284-305.

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Tomato allergy: impact of genotype and environmental factors on the biological response. / Dölle, Sabine; Schwarz, Dietmar; Lehmann, Karola; Weckwerth, Wolfram; George, Eckhard; Worm, Margitta (Corresponding author); Franken, Philipp.

In: Journal of the Science of Food and Agriculture, Vol. 91, No. 12, 2011, p. 2234-2240.

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Expression of root glutamate dehydrogenase genes in tobacco plants subjected to boron deprivation. / Beato, Victor M.; Navarro-Gochicoa, Teresa M.; Rexach, Jesus; Herrera-Rodriguez, Begona M.; Camacho-Christobal, Juan J.; Kempa, Stefan; Weckwerth, Wolfram (Corresponding author); Gonzales-Fontes, Ausgustin.

In: Plant Physiology and Biochemistry, Vol. 49, No. 11, 2011, p. 1350-1354.

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Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010. / Weckwerth, Wolfram.

In: Journal of Proteomics, Vol. 75, No. 1, 2011, p. 4-17.

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MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. / Höhenwarter, Wolfgang (Corresponding author); Larhlimi, Abdelhalim; Hummel, Jan; Egelhofer, Volker; Selbig, Joachim; van Dongen, Joost T.; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Journal of Proteome Research, Vol. 10, No. 7, 2011, p. 2979-2991.

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Unpredictability of metabolism-the key role of metabolomics science in combination with next-generation genome sequencing. / Weckwerth, Wolfram (Corresponding author).

In: Analytical and Bioanalytical Chemistry, Vol. 400, 2011, p. 1967-1978.

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A Cloud Framework for High Throughput Biological Data Processing. / Köhler, Martin (Corresponding author); Kaniovskyi, Yuriy; Benkner, Siegfried; Egelhofer, Volker; Weckwerth, Wolfram.

In: Pos - Proceedings of Science, 2011.

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Mining the soluble chloroplast proteome by affinity chromatography. / Bayer, Roman; Stael, Simon Lander; Csaszar, Edina; Teige, Markus (Corresponding author).

In: Proteomics, Vol. 11, No. 7, 2011, p. 1287-1299.

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Protein N-acylation overrides differing targeting signals. / Stael, Simon Lander; Bayer, Roman; Mehlmer, Norbert; Teige, Markus (Corresponding author).

In: FEBS Letters, Vol. 585, No. 3, 2011, p. 517-522.

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Arabidopsis calcium-binding mitochondrial carrier proteins as potential facilitators of mitochondrial ATP-import and plastid SAM-import. / Stael, Simon Lander; Rocha, Agostinho G.; Robinson, Alan; Kmiecik, Przemyslaw; Vothknecht, Ute; Teige, Markus (Corresponding author).

In: FEBS Letters, Vol. 585, No. 24, 2011, p. 3935-3940.

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The Model Plant Arabidopsis thaliana for Metabolomic and Proteomic Phenotyping. / Staudinger, Christiana; Mehmeti-Tershani, Vlora; Weckwerth, Wolfram; Wienkoop, Stefanie.

2011. Poster session presented at ICAR 2011 - 22nd International Conference on Arabidopsis Research, Wisconsin, United States.

Publication: Contribution to conference › Poster

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Comparative Metabolomics of Medicago truncatula roots and shoots under salt stress and recovery. / Mehmeti-Tershani, Vlora; Staudinger, Christiana; Weckwerth, Wolfram; Wienkoop, Stefanie.

2010. Poster session presented at 9th European Nitrogen Fixation Conference, Geneva, Switzerland.

Publication: Contribution to conference › Poster

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The changing fate of a secretory glycoprotein in developing maize endosperm. / Arcalis, Elsa; Stadlmann, Johannes; Marcel, Sylvain; Drakakaki, Georgia; Winter, Verena; Rodriguez, Julian; Fischer, Rainer; Altmann, Friedrich; Stoger, Eva.

In: Plant Physiology, Vol. 153, No. 2, 06.2010, p. 693-702.

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Mathematical Modeling of the Central Carbohydrate Metabolism in Arabidopsis Reveals a Substantial Regulatory Influence of Vacuolar Invertase on Whole Plant Carbon Metabolism. / Nägele, Thomas; Henkel, Sebastian; Hoermiller, Imke; Sauter, Thomas; Sawodny, Oliver; Ederer, Michael; Heyer, Arnd G.; Nägele, Thomas.

In: Plant Physiology, Vol. 153, No. 1, 05.2010, p. 260-272.

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A proteomics toolbox. / Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Analytica PRO – Das offizielle Messe-Magazin, Vol. 1, No. 2010, 2010, p. 22-25.

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Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Methods in Molecular Biology - "Bioinformatics for Comparative Proteomics". / May, Patrick; Christian, Niels; Ebenhöh, Oliver; Weckwerth, Wolfram; Walther, Dirk.

Bioinformatics for Comparative Proteomics. ed. / Cathy H. Wu; Chuming Chen. Springer, 2010. p. 341-364 (Methods in Molecular Biology).

Publication: Contribution to book › Chapter

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Contribution of carbon fixed by Rubisco and PEPC to phloem export in the Crassulacean acid metabolism plant Kalanchoë daigremontiana. / Wild, Birgit (Corresponding author); Wanek, Wolfgang; Postl, Wolfgang; Richter, Andreas.

In: Journal of Experimental Botany, Vol. 61, No. 5, 2010, p. 1375-1383.

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Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. / Chen, Yanmei; Höhenwarter, Wolfgang; Weckwerth, Wolfram (Corresponding author).

In: The Plant Journal, Vol. 63, No. 1, 2010, p. 1-17.

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The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors. / Kirchler, Tobias; Briesemeister, Sebastian; Singer, Miriam; Schütze, Katia; Keinath, Melanie; Kohlbacher, Oliver; Vicente-Carbajosa, Jesus; Teige, Markus; Harter, Klaus; Chaban, Christina (Corresponding author).

In: European Journal of Cell Biology, Vol. 89, No. 2-3, 2010, p. 175-183.

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Roles of Arabidopsis patatin-related phospholipases a in root development are related to auxin responses and phosphate deficiency. / Rietz, Steffen; Dermendjiev, Georgi-Atanasov; Oppermann, Esther; Tafesse, Fikadu Getah; Effendi, Yunus; Holk, André; Parker, Jane E.; Teige, Markus; Scherer, Günther F. E. (Corresponding author).

In: Molecular Plant, Vol. 3, No. 3, 2010, p. 524-538.

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Targeted Proteomics for Chlamydomonas reinhardtii combines mass western, subcellular protein fractionation, metabolomics and metabolic flux analysis. / Wienkoop, Stefanie; Weiß, Julia; May, Patrick; Kempa, Stefan; Irgang, Susann; Recuenco-Munoz, Luis; Pietzke, Matthias; Schwemmer, Thorsten; Rupprecht, Jens; Egelhofer, Volker; Weckwerth, Wolfram (Corresponding author).

In: Molecular BioSystems, Vol. 6, 2010, p. 1018-1031.

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Metabolomics - an integral technique in systems biology. / Weckwerth, Wolfram.

In: Bioanalysis, Vol. 2, No. 4, 2010, p. 829-836.

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The Ca(2+)-dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis. / Mehlmer, Norbert; Wurzinger, Bernhard; Stael, Simon Lander; Hofmann Rodrigues, Daniela; Csaszar, Edina; Pfister, Barbara; Bayer, Roman; Teige, Markus (Corresponding author).

In: The Plant Journal, Vol. 63, 2010, p. 484-498.

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Kinetic analysis of 14-3-3-inhibited arabidopsis thaliana nitrate reductase. / Lambeck, Iris; Chi, Jean-Chih; Krizowski, Sabrina; Mueller, Stefan; Mehlmer, Norbert; Teige, Markus; Fischer, Katrin; Schwarz, Guenter (Corresponding author).

In: Biochemistry, No. 37, 2010, p. 8177-8186.

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An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community. / Bastow, Ruth; Beynon, Jim; Estelle, Mark; Weckwerth, Wolfram.

In: The Plant Cell, Vol. 22, 2010, p. 2530-2536.

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Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import. / Prestele, Jakob; Hierl, Georg; Scherling, Christian; Hetkamp, Stefan; Isono, Erika; Weckwerth, Wolfram; Wanner, Gerhard; Gietl, Christine (Corresponding author).

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 107, No. 33, 2010, p. 14915-14920.

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Arabidopsis thaliana as a model organism for plant proteome research. / Wienkoop, Stefanie (Corresponding author); Baginsky, Sacha; Weckwerth, Wolfram.

In: Journal of Proteomics, Vol. 73, No. 11, 2010, p. 2239-2248.

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Spectral counting robust on high mass accuracy mass spectrometers. / Höhenwarter, Wolfgang (Corresponding author); Wienkoop, Stefanie.

In: Rapid Communications in Mass Spectrometry, Vol. 24, No. 24, 2010, p. 3609-3614.

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Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. / Scherling, Christian; Roscher, Christiane; Giavalisco, Patrick; Schulze, Ernst-Detlef; Weckwerth, Wolfram (Corresponding author).

In: PLoS ONE, Vol. 5, No. 9, 2010.

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Differencial Nitrogen Source Associated Metabolite Changes of Medicago Truncatula Induced by Short Term Salt and mild Drought Stress. / Mehmeti-Tershani, Vlora; Staudinger, Christiana; Wienkoop, Stefanie.

2010. Poster session presented at 10th European nitrogen fixation conference, München, Germany.

Publication: Contribution to conference › Poster

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Chapter 7: Metabolic engineering. In: Molecular Biology and Biotechnology, Royal Society of Chemistry. / Weckwerth, Wolfram; Kempa, Stefan; Walther, Dirk; Ebenhöh, Oliver.

Molecular Biology and Biotechnology. RSC Publishing, 2009.

Publication: Contribution to book › Chapter

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Metabolomics and Proteomics data integration: from molecule to organism. / Weckwerth, Wolfram.

Plant Systems Biology. ed. / Gloria Coruzzi; Rodrigo Gutierrez. Wiley-Blackwell, 2009.

Publication: Contribution to book › Chapter

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Metabolomics: Integrating the Metabolome and the Proteome for Systems Biology. In: Plant Systems Biology, Vol. 35: Annual Plant Reviews. / Weckwerth, Wolfram.

Unknown host publication title. Wiley - V C H, 2009. (Annual Plant Reviews).

Publication: Contribution to book › Chapter

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Metabolic Engineering. / Kempa, Stefan; Walther, Dirk; Ebenhöh, Oliver; Weckwerth, Wolfram.

Molecular Biology and Biotechnology, 5th Edition, Royal Society of Chemistry 2009. ed. / John M. Walker; Ralph Rapley. Unknown publisher, 2009.

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Functional complementation of yeast mutants to study plant signalling pathways. / Mehlmer, Norbert; Scheikl, Elisabeth; Teige, Markus (Corresponding author).

Plant Signal Transduction. Humana Press, 2009. p. 235-245 (Methods in Molecular Biology).

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Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: availability of heterodimerization partners controls gene expression during stress response and development. / Weltmeier, Fridtjof; Rahmani, Fatima; Ehlert, Andrea; Dietrich, Katrin; Schütze, Katia; Wang, Xuang; Chaban, Christina; Hanson, Johannes; Teige, Markus; Harter, Klaus; Vicente-Carbajosa, Jesus; Smeekens, Sjef; Dröge-Laser, Wolfgang (Corresponding author).

In: Plant Molecular Biology: an international journal on molecular biology, biochemistry and genetic engineering, Vol. 69, No. 1-2, 2009, p. 107-119.

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Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. / Larrainzar, Estibaliz; Wienkoop, Stefanie (Corresponding author); Scherling, Christian; Kempa, Stefan; Ladrera, Ruben; Arrese-Igor, Cesar; Weckwerth, Wolfram; Gonzalez, Esther M. (Corresponding author).

In: Molecular Plant - Microbe Interactions, Vol. 22, No. 12, 2009, p. 1565-1576.

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Proteomics in Genomannotation und Systembiologie. / Wienkoop, Stefanie; Weckwerth, Wolfram.

In: BioSpektrum, Vol. 2009, No. 2, 2009, p. 148-151.

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A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. / Ito, Jun; Taylor, Nicolas L.; Castleden, Ian; Weckwerth, Wolfram; Millar, A. Harvey; Heazlewood, Joshua L. (Corresponding author).

In: Proteomics, Vol. 9, No. 17, 2009, p. 4229-4240.

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Evidence for novel tomato seed allergens: Ige-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling. / Bässler, Olivia Y.; Weiss, Julia; Wienkoop, Stefanie; Lehmann, Karola; Scheler, Christian; Dölle, Sabine; Schwarz, Dietmar; Franken, Philipp; George, Eckhard; Worm, Margitta; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteome Research, Vol. 8, No. 3, 2009, p. 1111-1122.

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An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. / Kempa, Stefan; Hummel, Jan; Schwemmer, Thorsten; Pietzke, Matthias; Strehmel, Nadine; Wienkoop, Stefanie; Kopka, Joachim; Weckwerth, Wolfram (Corresponding author).

In: Journal of Basic Microbiology: an international journal on biochemistry, physiology, genetics, morphology and ecology of microorganisms, Vol. 49, No. 1, 2009, p. 82-91.

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VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression. / Pitzschke, Andrea; Djamei, Armin; Teige, Markus; Hirt, Heribert (Corresponding author).

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 106, No. 43, 2009, p. 18414-18419.

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A Metabolic Signature of the Beneficial Interaction of the Endophyte Paenibacillus sp. Isolate and In Vitro–Grown Poplar Plants Revealed by Metabolomics. / Scherling, Christian; Ulrich, Kristina; Ewald, Dietrich; Weckwerth, Wolfram.

In: Molecular Plant - Microbe Interactions, Vol. 22, No. 8, 2009, p. 1032-1037.

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Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. / Durek, Pawel; Schudoma, Christian; Weckwerth, Wolfram; Selbig, Joachim; Walther, Dirk.

In: BMC Bioinformatics, Vol. 10, No. Art. 117, 2009.

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Phosphorylation of Sucrose-Phosphate Synthase by a native 350 KDa Akin10/11betagamma protein kinase complex. / Weckwerth, Wolfram (Corresponding author); Gadomska, Julita; Lehmann, Ute.

In: Plant Physiology, 2008.

Publication: Contribution to journal › Article

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