Publications


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A proteomics toolbox. / Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Analytica PRO – Das offizielle Messe-Magazin, Vol. 1, No. 2010, 2010, p. 22-25.

Publication: Contribution to journal › Article

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Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Methods in Molecular Biology - "Bioinformatics for Comparative Proteomics". / May, Patrick; Christian, Niels; Ebenhöh, Oliver; Weckwerth, Wolfram; Walther, Dirk.

Bioinformatics for Comparative Proteomics. ed. / Cathy H. Wu; Chuming Chen. Springer, 2010. p. 341-364 (Methods in Molecular Biology).

Publication: Contribution to book › Chapter

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Contribution of carbon fixed by Rubisco and PEPC to phloem export in the Crassulacean acid metabolism plant Kalanchoë daigremontiana. / Wild, Birgit (Corresponding author); Wanek, Wolfgang; Postl, Wolfgang; Richter, Andreas.

In: Journal of Experimental Botany, Vol. 61, No. 5, 2010, p. 1375-1383.

Publication: Contribution to journal › Article

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Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. / Chen, Yanmei; Höhenwarter, Wolfgang; Weckwerth, Wolfram (Corresponding author).

In: The Plant Journal, Vol. 63, No. 1, 2010, p. 1-17.

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The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors. / Kirchler, Tobias; Briesemeister, Sebastian; Singer, Miriam; Schütze, Katia; Keinath, Melanie; Kohlbacher, Oliver; Vicente-Carbajosa, Jesus; Teige, Markus; Harter, Klaus; Chaban, Christina (Corresponding author).

In: European Journal of Cell Biology, Vol. 89, No. 2-3, 2010, p. 175-183.

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Roles of Arabidopsis patatin-related phospholipases a in root development are related to auxin responses and phosphate deficiency. / Rietz, Steffen; Dermendjiev, Georgi-Atanasov; Oppermann, Esther; Tafesse, Fikadu Getah; Effendi, Yunus; Holk, André; Parker, Jane E.; Teige, Markus; Scherer, Günther F. E. (Corresponding author).

In: Molecular Plant, Vol. 3, No. 3, 2010, p. 524-538.

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Targeted Proteomics for Chlamydomonas reinhardtii combines mass western, subcellular protein fractionation, metabolomics and metabolic flux analysis. / Wienkoop, Stefanie; Weiß, Julia; May, Patrick; Kempa, Stefan; Irgang, Susann; Recuenco-Munoz, Luis; Pietzke, Matthias; Schwemmer, Thorsten; Rupprecht, Jens; Egelhofer, Volker; Weckwerth, Wolfram (Corresponding author).

In: Molecular BioSystems, Vol. 6, 2010, p. 1018-1031.

Publication: Contribution to journal › Article

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Metabolomics - an integral technique in systems biology. / Weckwerth, Wolfram.

In: Bioanalysis, Vol. 2, No. 4, 2010, p. 829-836.

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The Ca(2+)-dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis. / Mehlmer, Norbert; Wurzinger, Bernhard; Stael, Simon Lander; Hofmann Rodrigues, Daniela; Csaszar, Edina; Pfister, Barbara; Bayer, Roman; Teige, Markus (Corresponding author).

In: The Plant Journal, Vol. 63, 2010, p. 484-498.

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Kinetic analysis of 14-3-3-inhibited arabidopsis thaliana nitrate reductase. / Lambeck, Iris; Chi, Jean-Chih; Krizowski, Sabrina; Mueller, Stefan; Mehlmer, Norbert; Teige, Markus; Fischer, Katrin; Schwarz, Guenter (Corresponding author).

In: Biochemistry, No. 37, 2010, p. 8177-8186.

Publication: Contribution to journal › Article

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An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community. / Bastow, Ruth; Beynon, Jim; Estelle, Mark; Weckwerth, Wolfram.

In: The Plant Cell, Vol. 22, 2010, p. 2530-2536.

Publication: Contribution to journal › Article

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Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import. / Prestele, Jakob; Hierl, Georg; Scherling, Christian; Hetkamp, Stefan; Isono, Erika; Weckwerth, Wolfram; Wanner, Gerhard; Gietl, Christine (Corresponding author).

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 107, No. 33, 2010, p. 14915-14920.

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Arabidopsis thaliana as a model organism for plant proteome research. / Wienkoop, Stefanie (Corresponding author); Baginsky, Sacha; Weckwerth, Wolfram.

In: Journal of Proteomics, Vol. 73, No. 11, 2010, p. 2239-2248.

Publication: Contribution to journal › Article

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Spectral counting robust on high mass accuracy mass spectrometers. / Höhenwarter, Wolfgang (Corresponding author); Wienkoop, Stefanie.

In: Rapid Communications in Mass Spectrometry, Vol. 24, No. 24, 2010, p. 3609-3614.

Publication: Contribution to journal › Article

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Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. / Scherling, Christian; Roscher, Christiane; Giavalisco, Patrick; Schulze, Ernst-Detlef; Weckwerth, Wolfram (Corresponding author).

In: PLoS ONE, Vol. 5, No. 9, 2010.

Publication: Contribution to journal › Article

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Differencial Nitrogen Source Associated Metabolite Changes of Medicago Truncatula Induced by Short Term Salt and mild Drought Stress. / Mehmeti-Tershani, Vlora; Staudinger, Christiana; Wienkoop, Stefanie.

2010. Poster session presented at 10th European nitrogen fixation conference, München, Germany.

Publication: Contribution to conference › Poster

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Chapter 7: Metabolic engineering. In: Molecular Biology and Biotechnology, Royal Society of Chemistry. / Weckwerth, Wolfram; Kempa, Stefan; Walther, Dirk; Ebenhöh, Oliver.

Molecular Biology and Biotechnology. RSC Publishing, 2009.

Publication: Contribution to book › Chapter

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Metabolomics and Proteomics data integration: from molecule to organism. / Weckwerth, Wolfram.

Plant Systems Biology. ed. / Gloria Coruzzi; Rodrigo Gutierrez. Wiley-Blackwell, 2009.

Publication: Contribution to book › Chapter

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Metabolomics: Integrating the Metabolome and the Proteome for Systems Biology. In: Plant Systems Biology, Vol. 35: Annual Plant Reviews. / Weckwerth, Wolfram.

Unknown host publication title. Wiley - V C H, 2009. (Annual Plant Reviews).

Publication: Contribution to book › Chapter

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Metabolic Engineering. / Kempa, Stefan; Walther, Dirk; Ebenhöh, Oliver; Weckwerth, Wolfram.

Molecular Biology and Biotechnology, 5th Edition, Royal Society of Chemistry 2009. ed. / John M. Walker; Ralph Rapley. Unknown publisher, 2009.

Publication: Contribution to book › Chapter

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Functional complementation of yeast mutants to study plant signalling pathways. / Mehlmer, Norbert; Scheikl, Elisabeth; Teige, Markus (Corresponding author).

Plant Signal Transduction. Humana Press, 2009. p. 235-245 (Methods in Molecular Biology).

Publication: Contribution to book › Chapter

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Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: availability of heterodimerization partners controls gene expression during stress response and development. / Weltmeier, Fridtjof; Rahmani, Fatima; Ehlert, Andrea; Dietrich, Katrin; Schütze, Katia; Wang, Xuang; Chaban, Christina; Hanson, Johannes; Teige, Markus; Harter, Klaus; Vicente-Carbajosa, Jesus; Smeekens, Sjef; Dröge-Laser, Wolfgang (Corresponding author).

In: Plant Molecular Biology: an international journal on molecular biology, biochemistry and genetic engineering, Vol. 69, No. 1-2, 2009, p. 107-119.

Publication: Contribution to journal › Article

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Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. / Larrainzar, Estibaliz; Wienkoop, Stefanie (Corresponding author); Scherling, Christian; Kempa, Stefan; Ladrera, Ruben; Arrese-Igor, Cesar; Weckwerth, Wolfram; Gonzalez, Esther M. (Corresponding author).

In: Molecular Plant - Microbe Interactions, Vol. 22, No. 12, 2009, p. 1565-1576.

Publication: Contribution to journal › Article

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Proteomics in Genomannotation und Systembiologie. / Wienkoop, Stefanie; Weckwerth, Wolfram.

In: BioSpektrum, Vol. 2009, No. 2, 2009, p. 148-151.

Publication: Contribution to journal › Article

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A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. / Ito, Jun; Taylor, Nicolas L.; Castleden, Ian; Weckwerth, Wolfram; Millar, A. Harvey; Heazlewood, Joshua L. (Corresponding author).

In: Proteomics, Vol. 9, No. 17, 2009, p. 4229-4240.

Publication: Contribution to journal › Article

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Evidence for novel tomato seed allergens: Ige-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling. / Bässler, Olivia Y.; Weiss, Julia; Wienkoop, Stefanie; Lehmann, Karola; Scheler, Christian; Dölle, Sabine; Schwarz, Dietmar; Franken, Philipp; George, Eckhard; Worm, Margitta; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteome Research, Vol. 8, No. 3, 2009, p. 1111-1122.

Publication: Contribution to journal › Article

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An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. / Kempa, Stefan; Hummel, Jan; Schwemmer, Thorsten; Pietzke, Matthias; Strehmel, Nadine; Wienkoop, Stefanie; Kopka, Joachim; Weckwerth, Wolfram (Corresponding author).

In: Journal of Basic Microbiology: an international journal on biochemistry, physiology, genetics, morphology and ecology of microorganisms, Vol. 49, No. 1, 2009, p. 82-91.

Publication: Contribution to journal › Article

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VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression. / Pitzschke, Andrea; Djamei, Armin; Teige, Markus; Hirt, Heribert (Corresponding author).

In: Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 106, No. 43, 2009, p. 18414-18419.

Publication: Contribution to journal › Article

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A Metabolic Signature of the Beneficial Interaction of the Endophyte Paenibacillus sp. Isolate and In Vitro–Grown Poplar Plants Revealed by Metabolomics. / Scherling, Christian; Ulrich, Kristina; Ewald, Dietrich; Weckwerth, Wolfram.

In: Molecular Plant - Microbe Interactions, Vol. 22, No. 8, 2009, p. 1032-1037.

Publication: Contribution to journal › Article

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Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. / Durek, Pawel; Schudoma, Christian; Weckwerth, Wolfram; Selbig, Joachim; Walther, Dirk.

In: BMC Bioinformatics, Vol. 10, No. Art. 117, 2009.

Publication: Contribution to journal › Article

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Phosphorylation of Sucrose-Phosphate Synthase by a native 350 KDa Akin10/11betagamma protein kinase complex. / Weckwerth, Wolfram (Corresponding author); Gadomska, Julita; Lehmann, Ute.

In: Plant Physiology, 2008.

Publication: Contribution to journal › Article

Angenommen/In Druck

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Differentiation between protein O-phosphorylation and O- sulfonation by positive ion electrospray tandem mass spectrometry. / Weckwerth, Wolfram; Glinski, Mirko (Corresponding author); Wolschin, Florian.

In: Rapid Communications in Mass Spectrometry, 2008.

Publication: Contribution to journal › Article

Angenommen/In Druck

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The multinational Arabidopsis steering subcommitee for proteomics assembles the largest proteome database resource for plant systems biology. / Weckwerth, Wolfram; Baginsky, Sacha; van Wijk, Klaas; Heazlewood, Joshua L.; Millar, A. Harvey.

In: Journal of Proteome Research, Vol. 7, 2008, p. 4209-4210.

Publication: Contribution to journal › Article

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Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry. / Wienkoop, Stefanie (Corresponding author); Larrainzar, Estibaliz; Glinski, Mirko; Gonzalez, Esther M.; Arrese-Igor, Cesar; Weckwerth, Wolfram.

In: Journal of Experimental Botany, Vol. 59, No. 12, 2008, p. 3307-3315.

Publication: Contribution to journal › Article

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Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana. / Wienkoop, Stefanie; Morgenthal, Katja; Wolschin, Florian; Scholz, Matthias; Selbig, Joachim; Weckwerth, Wolfram.

In: Molecular and Cellular Proteomics, Vol. 7, 2008, p. 1725-1736.

Publication: Contribution to journal › Article

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Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. / May, Patrick; Wienkoop, Stefanie; Kempa, Stefan; Usadel, Björn; Christian, Niels; Rupprecht, Jens; Weiss, Julia; Recuenco-Munoz, Luis; Ebenhöh, Oliver; Weckwerth, Wolfram; Walther, Dirk (Corresponding author).

In: Genetics: a periodical record of investigations bearing on heredity and variation, Vol. 179, 2008, p. 157-166.

Publication: Contribution to journal › Article

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A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. / Höhenwarter, Wolfgang; van Dongen, Joost T.; Wienkoop, Stefanie; Steinfath, Mtthias; Hummel, Jan; Erban, Alexander; Sulpice, Ronan; Regierer, Babette; Kopka, Joachim; Geigenberger, Peter; Weckwerth, Wolfram.

In: Proteomics, Vol. 8, 2008, p. 4214-4225.

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PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. / Heazlewood, Joshua L.; Durek, Pawel; Hummel, Jan; Selbig, Joachim; Weckwerth, Wolfram; Walther, Dirk; Schulze, Waltraud X.

In: Nucleic Acids Research, Vol. 36, No. suppl 1, 2008, p. 1015-1021.

Publication: Contribution to journal › Article

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A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. / Wienkoop, Stefanie; Weckwerth, Wolfram; Timm, Stefan; Nunes-Nesi, Adriano; Pärnik, Tiit; Bauwe, Hermann; Keerberg, Olav; Kleczkowski, Leszek A.; Fernie, Alisdair R.; Morgenthal, Katja.

In: The Plant Cell, Vol. 20, No. 10, 2008, p. 2848-2859.

Publication: Contribution to journal › Article

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If the antibody fails -- a mass Western approach. / Lehmann, Ute; Wienkoop, Stefanie; Tschoep, Hendrik; Weckwerth, Wolfram (Corresponding author).

In: The Plant Journal, Vol. 55, No. 6, 2008, p. 1039-1046.

Publication: Contribution to journal › Article

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Integration of metabolomics and proteomics in molecular plant physiology -- coping with the complexity by data-dimensionality reduction. / Weckwerth, Wolfram.

In: Physiologia Plantarum, Vol. 132, 2008, p. 176-189.

Publication: Contribution to journal › Article

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Experimental testing of predicted myristoylation targets involved in asymmetric cell division and calcium-dependent signalling. / Teige, Markus; Knoblich, Jürgen; Eisenhaber, Frank; Mehlmer, Norbert; Benetka, Wolfgang Michael; Maurer-Stroh, Sebastian; Betschinger, Jörg; Koranda, Manfred; Neumüller, Ralph; Sammer, Michaela.

In: Cell Cycle, Vol. 7, No. 23, 2008, p. 3709-3719.

Publication: Contribution to journal › Article

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The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis. / Schweighofer, Alois; Kazanaviciute, Vaiva; Scheikl, Elisabeth; Teige, Markus; Doczi, Robert; Hirt, Heribert; Schwanninger, Manfred; Kant, Merijn; Schuurink, Robert; Mauch, Felix; Buchala, Antony; Cardinale, Francesca; Meskiene, Irute.

In: The Plant Cell, Vol. 19, No. 7, 07.2007, p. 2213-2224.

Publication: Contribution to journal › Article

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The MAP kinase kinase MKK2 affects disease resistance in Arabidopsis. / Hirt, Heribert (Corresponding author); Brader, Güther; Djamei, Armin; Teige, Markus; Palva, E. Tapio.

In: Molecular Plant - Microbe Interactions, Vol. 20, No. 5, 2007, p. 589-596.

Publication: Contribution to journal › Article

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The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling. / Hirt, Heribert (Corresponding author); Doczi, Robert; Brader, Güther; Pettko-Szandtner, Aladar; Rajh, Iva; Djamei, Armin; Pitzschke, Andrea; Teige, Markus.

In: The Plant Cell, Vol. 19, 2007, p. 3266-3279.

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Ubiquitin lysine 63 chain-forming ligases regulate apical dominance in Arabidopsis. / Yin, Xiao-Jun; Volk, Sara; Ljung, Karin; Mehlmer, Norbert; Dolezal, Karel; Ditengou, Franck; Hanano, Shigeru; Davis, Seth J.; Schmelzer, Elmon; Sandberg, Göran; Teige, Markus; Palme, Klaus; Pickart, Cecile; Bachmair, Andreas.

In: The Plant Cell, Vol. 19, No. 6, 2007, p. 1898-1911.

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NADP-dependent mannitol dehydrogenase, a major allergen of Cladosporium herbarum. / Simon-Nobbe, Birgit; Denk, Ursula; Schneider, Peter Bernhard; Radauer, Christian; Teige, Markus; Crameri, Reto; Hawranek, Thomas; Lang, Roland; Richter, Klaus H.; Schmid-Grendelmeier, Peter; Nobbe, Stephan; Hartl, Arnulf; Breitenbach, Michael (Corresponding author).

In: Journal of Biological Chemistry, Vol. 281, No. 24, 2006, p. 16354-16360.

Publication: Contribution to journal › Article

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The Arabidopsis MAP kinase kinase MKK1 participates in defence responses to the bacterial elicitor flagellin. / Mészáros, Tamás; Helfer, Anne; Hatzimasoura, Elizabeth; Magyar, Zoltán; Serazetdinova, Liliya; Rios, Gabino; Bardóczy, Viola; Teige, Markus; Koncz, Csaba; Peck, Scott C.; Bögre, László.

In: The Plant Journal, Vol. 48, No. 4, 2006, p. 485-498.

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Untersuchung trockengestresster Getreide anhand Fernerkundungsmethoden. / Postl, Wolfgang; Haumann, Judith; Linke, Rita; Huber, Katja (Corresponding author); Eitzinger, Josef; Weihs, Philipp; Rischbeck, Pablo; Schneider, Werner; Kaiser, Georg.

Tagungsband des 9. Österreichischen Klimatags: Klima, Klimawandel und Auswirkungen. Unknown publisher, 2006.

Publication: Contribution to book › Contribution to proceedings

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Agriculture and Global Climate Change: Influences of changed growth conditions (elevated CO2 concentration and temperature (+3°C)) an important cultural crops in Austria. / Bolhar-Nordenkampf, Harald; Meister, Margit; Postl, Wolfgang; Linke, Rita (Corresponding author); Haumann, Judith.

Tagungsband des 9. Österreichischen Klimatags: Klima, Klimawandel und Auswirkungen. Unknown publisher, 2006.

Publication: Contribution to book › Contribution to proceedings

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