Publications


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Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects. / Agrawal, Ganesh Kumar (Corresponding author); Sarkar, Abhijit; Agrawal, Raj; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Proteomics, Vol. 12, No. 3, 2012, p. 359-368.

Publication: Contribution to journal › Article

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INPPO Actions and Recognition as a Driving Force for Progress in Plant Proteomics : Change of Guard, INPPO Update, and Upcoming Activities. / Agrawal, Ganesh Kumar; Job, Dominique; Kieselbach, Thomas; Barkla, Bronwyn J.; Chen, Sixue; Deswal, Renu; Luethje, Sabine; Amalraj, Ramesh Sundar; Tanou, Georgia; Ndimba, Bongani Kaiser; Cramer, Rainer; Weckwerth, Wolfram; Wienkoop, Stefanie; Dunn, Michael J.; Kim, Sun Tae; Fukao, Yochiro; Yonekura, Masami; Zolla, Lello; Rohila, Jai Singh; Waditee-Sirisattha, Rungaroon; Masi, Antonio; Wang, Tai; Sarkar, Abhijit; Agrawal, Raj; Renaut, Jenny; Rakwal, Randeep.

In: Proteomics, Vol. 13, No. 21, 11.2013, p. 3093-3100.

Publication: Contribution to journal › Article

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Ectopic overexpression of the cell wall invertase gene CIN1 leads to dehydration avoidance in tomato. / Albacete, Alfonso; Cantero-Navarro, Elena; Großinsky, Dominik K.; Arias, Cintia L.; Encarnation Balibrea, Maria; Bru, Roque; Fragner, Lena; Ghanem, Michael E.; de la Cruz Gonzalez, Maria; Hernandez, Jose A.; Martinez-Andujar, Cristina; van der Graaff, Eric; Weckwerth, Wolfram; Zellnig, Günther; Perez-Alfocea, Francisco (Corresponding author); Roitsch, Thomas.

In: Journal of Experimental Botany, 2014, p. eru448.

Publication: Contribution to journal › Article

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Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles. / Alegre, Sara; Pascual, Jesús; Nagler, Matthias; Weckwerth, Wolfram; Cañal, María Jesús; Valledor, Luis (Corresponding author).

In: Data in Brief, Vol. 7, 06.2016, p. 1477-1482.

Publication: Contribution to journal › Article

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Field-omics-understanding large-scale molecular data from field crops. / Alexandersson, Erik; Jacobson, Dan; Vivier, Melane A.; Weckwerth, Wolfram; Andreasson, Erik (Corresponding author).

In: Frontiers in Plant Science, Vol. 5, 286, 20.06.2014.

Publication: Contribution to journal › Article

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1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. / Alonso-Blanco, Carlos; Andrade, Jorge; Becker, Claude; Bemm, Felix; Bergelson, Joy; Borgwardt, Karsten M.; Cao, Jun; Chae, Eunyoung; Dezwaan, Todd M.; Ding, Wei; Ecker, Joseph R.; Exposito-Alonso, Moises; Farlow, Ashley; Fitz, Joffrey; Gan, Xiangchao; Grimm, Dominik G.; Hancock, Angela M.; Henz, Stefan R.; Holm, Svante; Horton, Matthew; Jarsulic, Mike; Kerstetter, Randall A.; Korte, Arthur; Korte, Pamela; Lanz, Christa; Lee, Cheng-Ruei; Meng, Dazhe; Michael, Todd P.; Mott, Richard; Muliyati, Ni Wayan; Nägele, Thomas; Nagler, Matthias; Nizhynska, Viktoria; Nordborg, Magnus; Novikova, Polina Yu.; Pico, F. Xavier; Platzer, Alexander; Rabanal, Fernando A.; Rodriguez, Alex; Rowan, Beth A.; Salome, Patrice A.; Schmid, Karl J.; Schmitz, Robert J.; Seren, Umit; Sperone, Felice Gianluca; Sudkamp, Mitchell; Svardal, Hannes; Tanzer, Matt M.; Todd, Donald; Volchenboum, Samuel L.; Wang, Congmao; Wang, George; Wang, Xi; Weckwerth, Wolfram; Weigel, Detlef; Zhou, Xuefeng; 1001 Genomes Consortium.

In: Cell, Vol. 166, No. 2, 14.07.2016, p. 481-491.

Publication: Contribution to journal › Article

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Differential CO2 effect on primary carbon metabolism of flag leaves in durum wheat (Triticum durum Desf.). / Aranjuelo, Iker; Erice, Gorka; Sanz-Sáez, Alvaro; Abadie, Cyril; Gilard, Françoise; Gil-Quintana, Erena; Avice, Jean-Christophe; Staudinger, Christiana; Wienkoop, Stefanie; Araus, Jose L; Bourguignon, Jacques; Irigoyen, Juan J; Tcherkez, Guillaume.

In: Plant, Cell and Environment, Vol. 38, 17.06.2015, p. 2780-2794.

Publication: Contribution to journal › Article

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Evidence for novel tomato seed allergens: Ige-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling. / Bässler, Olivia Y.; Weiss, Julia; Wienkoop, Stefanie; Lehmann, Karola; Scheler, Christian; Dölle, Sabine; Schwarz, Dietmar; Franken, Philipp; George, Eckhard; Worm, Margitta; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteome Research, Vol. 8, No. 3, 2009, p. 1111-1122.

Publication: Contribution to journal › Article

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An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community. / Bastow, Ruth; Beynon, Jim; Estelle, Mark; Weckwerth, Wolfram.

In: The Plant Cell, Vol. 22, 2010, p. 2530-2536.

Publication: Contribution to journal › Article

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Chloroplast isolation and affinity chromatography for enrichment of low-abundant proteins in complex proteomes. / Bayer, Roman G; Stael, Simon; Teige, Markus.

In: Methods in Molecular Biology, Vol. 1295, 2015, p. 211-23.

Publication: Contribution to journal › Article

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Higher Plant Proteins of Cyanobacterial Origin : Are They or Are They Not Preferentially Targeted to Chloroplasts? / Bayer, Roman G.; Koestler, Tina; Jain, Arpit; Stael, Simon; Ebersberger, Ingo; Teige, Markus.

In: Molecular Plant, Vol. 7, No. 12, 12.2014, p. 1797-1800.

Publication: Contribution to journal › Editorial

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Mining the soluble chloroplast proteome by affinity chromatography. / Bayer, Roman; Stael, Simon Lander; Csaszar, Edina; Teige, Markus (Corresponding author).

In: Proteomics, Vol. 11, No. 7, 2011, p. 1287-1299.

Publication: Contribution to journal › Article

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Chloroplast-localized protein kinases : a step forward towards a complete inventory. / Bayer, Roman G; Stael, Simon; Rocha, Agostinho G; Mair, Andrea; Vothknecht, Ute C; Teige, Markus.

In: Journal of Experimental Botany, Vol. 63, No. 4, 02.2012, p. 1713-23.

Publication: Contribution to journal › Article

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Expression of root glutamate dehydrogenase genes in tobacco plants subjected to boron deprivation. / Beato, Victor M.; Navarro-Gochicoa, Teresa M.; Rexach, Jesus; Herrera-Rodriguez, Begona M.; Camacho-Christobal, Juan J.; Kempa, Stefan; Weckwerth, Wolfram (Corresponding author); Gonzales-Fontes, Ausgustin.

In: Plant Physiology and Biochemistry, Vol. 49, No. 11, 2011, p. 1350-1354.

Publication: Contribution to journal › Article

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Tandem Metal-Oxide Affinity Chromatography for Enhanced Depth of Phosphoproteome Analysis. / Beckers, Gerold J M; Höhenwarter, Wolfgang; Röhrig, Horst; Conrath, Uwe; Weckwerth, Wolfram.

Methods in Molecular Biology: Plant Proteomics - Methods and Protocols. ed. / Jesus V. Jorrin-Novo; Setsuko Komatsu; Wolfram Weckwerth; Stefanie Wienkoop. Vol. 1072 Humana Press, 2014. p. 621-632.

Publication: Contribution to book › Chapter

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Metabolism and development - integration of micro computed tomography data and metabolite profiling reveals metabolic reprogramming from floral initiation to silique development. / Bellaire, Anke; Ischebeck, Till; Städler, Yannick; Weinhaeuser, Isabell; Mair, Andrea; Parameswaran, Sriram; Ito, Toshiro; Schönenberger, Jürg; Weckwerth, Wolfram.

In: New Phytologist, Vol. 202, No. 1, 04.2014, p. 322-335.

Publication: Contribution to journal › Article

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The developmental trajectory of Arabidopsis flowers. / Bellaire, Anke; Ischebeck, Till; Weingartner, Isabell; Städler, Yannick; Schönenberger, Jürg; Weckwerth, Wolfram.

2012. Poster session presented at International Conference on Arabidopsis Research, Wien, Austria.

Publication: Contribution to conference › Poster

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The developmental trajectory of Arabidopsis flowers. / Bellaire, Anke; Ischebeck, Till; Weingartner, Isabell; Städler, Yannick; Schönenberger, Jürg; Weckwerth, Wolfram.

International Conference on Arabidopsis Research. Wien, 3. bis 7. Juli 2012. Abstract book. Unknown publisher, 2012.

Publication: Contribution to book › Contribution to proceedings

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Agriculture and Global Climate Change: Influences of changed growth conditions (elevated CO2 concentration and temperature (+3°C)) an important cultural crops in Austria. / Bolhar-Nordenkampf, Harald; Meister, Margit; Postl, Wolfgang; Linke, Rita (Corresponding author); Haumann, Judith.

Tagungsband des 9. Österreichischen Klimatags: Klima, Klimawandel und Auswirkungen. Unknown publisher, 2006.

Publication: Contribution to book › Contribution to proceedings

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Exaggerated root respiration accounts for growth retardation in a starchless mutant of Arabidopsis thaliana. / Brauner, Katrin; Hörmiller, Imke; Nägele, Thomas; Heyer, Arnd G.

In: The Plant journal : for cell and molecular biology, Vol. 79, No. 1, 07.2014, p. 82-91.

Publication: Contribution to journal › Article

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Label-free quantitative proteomic analysis of tolerance to drought in Pisum sativum. / Castillejo, Maria Angeles (Corresponding author); Iglesias-García, Rebeca; Wienkoop, Stefanie; Rubiales, Diego.

In: Proteomics, Vol. 16, No. 21, 19.08.2016, p. 2776-2787.

Publication: Contribution to journal › Article

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Medicago truncatula proteomics for systems biology: : Novel rapid shotgun LC-MS approach for relative quantification based on full-scan selective peptide extraction (Selpex). / Castillejo, M Angeles; Staudinger, Christiana; Egelhofer, Volker; Wienkoop, Stefanie.

Plant Proteomics: Methods and Protocols. Vol. 1072 Humana Press, Inc., 2014. p. 303-313 (Methods and Protocols; Vol. 1072).

Publication: Contribution to book › Chapter

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Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming. / Chaturvedi, Palak; Ischebeck, Till; Egelhofer, Volker; Lichtscheidl-Schultz, Irene; Weckwerth, Wolfram.

In: Journal of Proteome Research, Vol. 12, No. 11, 01.11.2013, p. 4892-4903.

Publication: Contribution to journal › Article

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Pollen proteomics : from stress physiology to developmental priming. / Chaturvedi, Palak; Ghatak, Arindam; Weckwerth, Wolfram.

In: Sexual Plant Reproduction, Vol. 29, No. 1-2, 06.2016, p. 119-132.

Publication: Contribution to journal › Review

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Heat-treatment-responsive proteins in different developmental stages of tomato pollen detected by targeted mass accuracy precursor alignment (tMAPA). / Chaturvedi, Palak; Doerfler, Hannes; Jegadeesan, Sridharan; Ghatak, Arindam; Pressman, Etan; Castillejo, Maria Angeles; Wienkoop, Stefanie; Egelhofer, Volker; Firon, Nurit; Weckwerth, Wolfram (Corresponding author).

In: Journal of Proteome Research, Vol. 14, No. 11, 06.11.2015, p. 4463-4471.

Publication: Contribution to journal › Article

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Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. / Chen, Yanmei; Höhenwarter, Wolfgang; Weckwerth, Wolfram (Corresponding author).

In: The Plant Journal, Vol. 63, No. 1, 2010, p. 1-17.

Publication: Contribution to journal › Article

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Versatile redox chemistry complicates antioxidant capacity assessment : flavonoids as milieu-dependent anti- and pro-oxidants. / Chobot, Vladimir; Kubicova, Lenka; Bachmann, Gert; Hadacek, Franz.

In: International Journal of Molecular Sciences, Vol. 14, No. 6, 04.06.2013, p. 11830-41.

Publication: Contribution to journal › Article

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Iron chelation and redox chemistry of anthranilic acid and 3-hydroxyanthranilic acid : A comparison of two structurally related kynurenine pathway metabolites to obtain improved insights into their potential role in neurological disease development. / Chobot, Vladimir; Hadacek, Franz; Weckwerth, Wolfram; Kubicova, Lenka.

In: Journal of Organometallic Chemistry, Vol. 782, 15.04.2015, p. 103-110.

Publication: Contribution to journal › Article

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Pro- and Antioxidant Activity of Three Selected Flavan Type Flavonoids: Catechin, Eriodictyol and Taxifolin. / Chobot, Vladimir (Corresponding author); Hadacek, Franz; Bachmann, Gert; Weckwerth, Wolfram; Kubicova, Lenka.

In: International Journal of Molecular Sciences, Vol. 17, No. 12, 26.11.2016.

Publication: Contribution to journal › Article

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SUMOylation represses SnRK1 signaling in Arabidopsis. / Crozet, Pierre; Margalha, Leonor; Butowt, Rafal; Fernandes, Noémia; Elias, Carlos A; Orosa, Beatriz; Tomanov, Konstantin; Teige, Markus; Bachmair, Andreas; Sadanandom, Ari; Baena-González, Elena.

In: The Plant journal : for cell and molecular biology, Vol. 85, No. 1, 01.2016, p. 120-133.

Publication: Contribution to journal › Article

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Changes in plastid proteome and structure in arbuscular mycorrhizal roots display a nutrient starvation signature. / Daher, Zeina; Recorbet, Ghislaine (Corresponding author); Solymosi, Katalin; Wienkoop, Stefanie; Mounier, Arnaud; Morandi, Dominique; Lherminier, Jeannine; Wipf, Daniel; Dumas-Gaudot, Eliane; Schoefs, Benoît.

In: Physiologia Plantarum, Vol. 159, No. 1, 25.08.2016, p. 13-29.

Publication: Contribution to journal › Article

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A Specialized Bird Pollination System with a Bellows Mechanism for Pollen Transfer and Staminal Food Body Rewards. / Dellinger, Agnes S.; Penneys, Darin S.; Städler, Yannick; Fragner, Lena; Weckwerth, Wolfram; Schönenberger, Jürg.

In: Current Biology, Vol. 24, No. 14, 21.07.2014, p. 1615-1619.

Publication: Contribution to journal › Article

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Microbial symbionts affect Pisum sativum proteome and metabolome under idymella pinodes infection. / Desalegn, Getinet; Turetschek, Reinhard; Kaul, Hans-Peter; Wienkoop, Stefanie (Corresponding author).

In: Journal of Proteomics, Vol. 143, 30.06.2016, p. 173-187.

Publication: Contribution to journal › Article

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Nutritional priming studies of P. sativum cv. Sirius to Rhizobium and mycorrhiza inoculation. / Desalegn, Getinet; Turetschek, Reinhard; Castillejo Sanchez, Marie-Angeles; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at VIPCA Intern. Conf. Plant Diseases and Resistance Mechanisms, Vienna, Austria.

Publication: Contribution to conference › Poster

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Rhizobium and mycorrhiza inoculation affect yield components in Pisum sativum L.. / Desalegn, Getinet; Turetschek, Reinhard; Klimek-Kopyra, Agnieszka; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at Tropentag 2013, Stuttgart-Hohenheim, Germany.

Publication: Contribution to conference › Poster

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Rhizobia inoculation reduces Didymella pinodes impacts on photosynthetic efficiency of Pisum sativum. / Desalegn, Getinet; Turetschek, Reinhard; Wienkoop, Stefanie; Kaul, Hans-Peter.

2016. Poster session presented at 2th European Nitrogen Fixation Conference, Budapest, Hungary.

Publication: Contribution to conference › Poster

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Nutritional priming studies of Pisum sativum cv. Sirius to Rhizobium and mycorrhiza inoculation. / Desalegn, Getinet; Turetschek, Reinhard; Castillejo Sanchez, Marie-Angeles; Kaul, Hans-Peter; Wienkoop, Stefanie.

2013. Poster session presented at VIPCA Intern. Conf. Plant Diseases and Resistance Mechanisms, Vienna, Austria.

Publication: Contribution to conference › Poster

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Responses of antioxidant enzymes to cold and high light are not correlated to freezing tolerance in natural accessions of Arabidopsis thaliana. / Distelbarth, Heidrun; Nägele, Thomas; Heyer, Arnd G.

In: Plant Biology, Vol. 15, No. 6, 11.2013, p. 982-990.

Publication: Contribution to journal › Article

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mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data. / Doerfler, Hannes; Sun, Xiaoliang; Wang, Lei; Engelmeier, Doris; Lyon, David; Weckwerth, Wolfram.

In: PLoS ONE, Vol. 9, No. 5, 96188, 20.05.2014.

Publication: Contribution to journal › Article

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Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism. / Doerfler, Hannes; Lyon, David; Nägele, Thomas; Sun, Xiaoliang; Fragner, Lena; Hadacek, Franz; Egelhofer, Volker; Weckwerth, Wolfram.

In: Metabolomics, Vol. 9, No. 3, 06.2013, p. 564-574.

Publication: Contribution to journal › Article

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Tomato allergy: impact of genotype and environmental factors on the biological response. / Dölle, Sabine; Schwarz, Dietmar; Lehmann, Karola; Weckwerth, Wolfram; George, Eckhard; Worm, Margitta (Corresponding author); Franken, Philipp.

In: Journal of the Science of Food and Agriculture, Vol. 91, No. 12, 2011, p. 2234-2240.

Publication: Contribution to journal › Article

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Combining microdilution with MicroResp (TM): Microbial substrate utilization, antimicrobial susceptibility and respiration. / Drage, Sigrid; Engelmeier, Doris; Bachmann, Gert; Sessitsch, Angela; Mitter, Birgit; Hadacek, Franz (Corresponding author).

In: Journal of Microbiological Methods, Vol. 88, No. 3, 2012, p. 399-412.

Publication: Contribution to journal › Article

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Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). / Dunn, Michael J.; Weckwerth, Wolfram.

In: Proteomics, Vol. 11, No. 9, 2011, p. 1559-1568.

Publication: Contribution to journal › Article

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Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. / Durek, Pawel; Schudoma, Christian; Weckwerth, Wolfram; Selbig, Joachim; Walther, Dirk.

In: BMC Bioinformatics, Vol. 10, No. Art. 117, 2009.

Publication: Contribution to journal › Article

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Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments. / Egelhofer, Volker; Hoehenwarter, Wolfgang; Lyon, David; Weckwerth, Wolfram; Wienkoop, Stefanie.

In: Nature Protocols, Vol. 8, No. 3, 28.02.2013, p. 595-601.

Publication: Contribution to journal › Article

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Gas Chromatography Coupled to Mass Spectrometry for Metabolomics Research. / Fragner, Lena; Furuhashi, Takeshi; Weckwerth, Wolfram.

Practical Gas Chromatography: A Comprehensive Reference. ed. / Katja Dettmer-Wilde; Werner Engewald. Springer-Verlag Berlin-Heidelberg, 2014. p. 783-797.

Publication: Contribution to book › Chapter

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Approximating the stabilization of cellular metabolism by compartmentalization. / Fürtauer, Lisa; Nägele, Thomas (Corresponding author).

In: Theory in Biosciences, Vol. 135, No. 1, 05.04.2016, p. 73-87.

Publication: Contribution to journal › Article

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Molecular and Pyhsiological Characterization of Leaf Development in Theobroma cacao. / Fürtauer, Lisa; Engelmeier, Doris; Bachmann, Gert; Weckwerth, Wolfram.

2015.

Publication: Contribution to conference › Poster

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A Benchtop Fractionation Procedure for Subcellular Analysis of the Plant Metabolome. / Fürtauer, Lisa; Weckwerth, Wolfram; Nägele, Thomas (Corresponding author).

In: Frontiers in Plant Science, Vol. 7, No. 1912, 22.12.2016.

Publication: Contribution to journal › Article

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Subcellular Stability Characteristics of the Central Carbohydrate Metabolism. / Fürtauer, Lisa; Nägele, Thomas.

2016.

Publication: Contribution to conference › Poster

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