Publications


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A Benchtop Fractionation Procedure for Subcellular Analysis of the Plant Metabolome. / Fürtauer, Lisa; Weckwerth, Wolfram; Nägele, Thomas (Corresponding author).

In: Frontiers in Plant Science, Vol. 7, No. 1912, 22.12.2016.

Publication: Contribution to journal › Article

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A Cloud Framework for High Throughput Biological Data Processing. / Köhler, Martin (Corresponding author); Kaniovskyi, Yuriy; Benkner, Siegfried; Egelhofer, Volker; Weckwerth, Wolfram.

In: Pos - Proceedings of Science, 2011.

Publication: Contribution to journal › Article

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A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. / Wienkoop, Stefanie; Weckwerth, Wolfram; Timm, Stefan; Nunes-Nesi, Adriano; Pärnik, Tiit; Bauwe, Hermann; Keerberg, Olav; Kleczkowski, Leszek A.; Fernie, Alisdair R.; Morgenthal, Katja.

In: The Plant Cell, Vol. 20, No. 10, 2008, p. 2848-2859.

Publication: Contribution to journal › Article

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A Metabolic Signature of the Beneficial Interaction of the Endophyte Paenibacillus sp. Isolate and In Vitro–Grown Poplar Plants Revealed by Metabolomics. / Scherling, Christian; Ulrich, Kristina; Ewald, Dietrich; Weckwerth, Wolfram.

In: Molecular Plant - Microbe Interactions, Vol. 22, No. 8, 2009, p. 1032-1037.

Publication: Contribution to journal › Article

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A Proteomic Workflow Using High-Throughput De Novo Sequencing Towards Complementation of Genome Information for Improved Comparative Crop Science. / Turetschek, Reinhard; Lyon, David; Desalegn, Getinet; Kaul, Hans-Peter; Wienkoop, Stefanie (Corresponding author).

In: Methods in Molecular Biology, Vol. 1394, 2016, p. 233-243.

Publication: Contribution to journal › Article

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A proteomics toolbox. / Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Analytica PRO – Das offizielle Messe-Magazin, Vol. 1, No. 2010, 2010, p. 22-25.

Publication: Contribution to journal › Article

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A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. / Höhenwarter, Wolfgang; van Dongen, Joost T.; Wienkoop, Stefanie; Steinfath, Mtthias; Hummel, Jan; Erban, Alexander; Sulpice, Ronan; Regierer, Babette; Kopka, Joachim; Geigenberger, Peter; Weckwerth, Wolfram.

In: Proteomics, Vol. 8, 2008, p. 4214-4225.

Publication: Contribution to journal › Article

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A Specialized Bird Pollination System with a Bellows Mechanism for Pollen Transfer and Staminal Food Body Rewards. / Dellinger, Agnes S.; Penneys, Darin S.; Städler, Yannick; Fragner, Lena; Weckwerth, Wolfram; Schönenberger, Jürg.

In: Current Biology, Vol. 24, No. 14, 21.07.2014, p. 1615-1619.

Publication: Contribution to journal › Article

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A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information. / Nägele, Thomas (Corresponding author); Fürtauer, Lisa; Nagler, Matthias; Weiszmann, Jakob; Weckwerth, Wolfram.

In: Frontiers in Molecular Biosciences, Vol. 3, No. 6, 07.03.2016.

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A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. / Ito, Jun; Taylor, Nicolas L.; Castleden, Ian; Weckwerth, Wolfram; Millar, A. Harvey; Heazlewood, Joshua L. (Corresponding author).

In: Proteomics, Vol. 9, No. 17, 2009, p. 4229-4240.

Publication: Contribution to journal › Article

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A systems biology approach for the analysis of carbohydrate dynamics during acclimation to low temperature in Arabidopsis thaliana. / Nägele, Thomas; Kandel, Benjamin A.; Frana, Sabine; Meissner, Meike; Heyer, Arnd G.; Nägele, Thomas.

In: The FEBS Journal, Vol. 278, No. 3, 02.2011, p. 506-518.

Publication: Contribution to journal › Article

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A tandem affinity purification tag of TGA2 for isolation of interacting proteins in Arabidopsis thaliana. / Stotz, Henrik U. (Corresponding author); Findling, Simone; Nukarinen, Ella Katariina; Weckwerth, Wolfram; Mueller, Martin J.; Berger, Susanne.

In: Plant Signaling & Behavior, Vol. 9, No. 10, 2014, p. e972794.

Publication: Contribution to journal › Article

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A toolset of aequorin expression vectors for in planta studies of subcellular calcium concentrations in Arabidopsis thaliana. / Mehlmer, Norbert; Parvin, Nargis; Hurst, Charlotte H.; Knight, Marc R.; Teige, Markus; Vothknecht, Ute.

In: Journal of Experimental Botany, Vol. 4, No. 63, 2012, p. 1751-1761.

Publication: Contribution to journal › Article

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A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms. / Valledor, Luis; Escandon, Monica; Meijon, Monica; Nukarinen, Ella; Jesus Canal, Maria; Weckwerth, Wolfram.

In: The Plant Journal, Vol. 79, No. 1, 07.2014, p. 173-180.

Publication: Contribution to journal › Article

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A workflow for mathematical modeling of subcellular metabolic pathways in leaf metabolism of Arabidopsis thaliana. / Nägele, Thomas; Weckwerth, Wolfram.

In: Frontiers in Plant Science, Vol. 4, 24.12.2013, p. 541.

Publication: Contribution to journal › Article

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Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry. / Wienkoop, Stefanie (Corresponding author); Larrainzar, Estibaliz; Glinski, Mirko; Gonzalez, Esther M.; Arrese-Igor, Cesar; Weckwerth, Wolfram.

In: Journal of Experimental Botany, Vol. 59, No. 12, 2008, p. 3307-3315.

Publication: Contribution to journal › Article

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Agriculture and Global Climate Change: Influences of changed growth conditions (elevated CO2 concentration and temperature (+3°C)) an important cultural crops in Austria. / Bolhar-Nordenkampf, Harald; Meister, Margit; Postl, Wolfgang; Linke, Rita (Corresponding author); Haumann, Judith.

Tagungsband des 9. Österreichischen Klimatags: Klima, Klimawandel und Auswirkungen. Unknown publisher, 2006.

Publication: Contribution to book › Contribution to proceedings

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Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms. / Wilhelm, Linda; Besemer, Katharina; Fragner, Lena; Peter, Hannes Markus; Weckwerth, Wolfram; Battin, Tom.

In: The ISME Journal: multidisciplinary journal of microbial ecology, Vol. 9, 15.05.2015, p. 2454-2464.

Publication: Contribution to journal › Article

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An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. / Kempa, Stefan; Hummel, Jan; Schwemmer, Thorsten; Pietzke, Matthias; Strehmel, Nadine; Wienkoop, Stefanie; Kopka, Joachim; Weckwerth, Wolfram (Corresponding author).

In: Journal of Basic Microbiology: an international journal on biochemistry, physiology, genetics, morphology and ecology of microorganisms, Vol. 49, No. 1, 2009, p. 82-91.

Publication: Contribution to journal › Article

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An evolutionary perspective of AMPK-TOR signaling in the three domains of life. / Roustan, Valentin (Corresponding author); Jain, Arpit (Corresponding author); Teige, Markus; Ebersberger, Ingo; Weckwerth, Wolfram.

In: Journal of Experimental Botany, Vol. 67, No. 13, 06.2016, p. 3897-907.

Publication: Contribution to journal › Article

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An evolutionary view on thylakoid protein phosphorylation uncovers novel phosphorylation hotspots with potential functional implications. / Grieco, Michele; Jain, Arpit; Ebersberger, Ingo; Teige, Markus (Corresponding author).

In: Journal of Experimental Botany, Vol. 67, No. 13, 06.2016, p. 3883-96.

Publication: Contribution to journal › Article

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An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics. / Valledor, Luis; Weckwerth, Wolfram.

Plant Proteomics: Methods and Protocols - Methods in Molecular Biology. ed. / Jesus V. Jorrin-Novo; Setsuko Komatsu; Wolfram Weckwerth; Stefanie Wienkoop. Vol. 1072 Humana Press, 2014. p. 347-358.

Publication: Contribution to book › Chapter

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An improved protocol to study the plant cell wall proteome. / Printz, Bruno; Dos Santos Morais, Raphaël; Wienkoop, Stefanie; Sergeant, Kjell; Lutts, Stanley; Hausman, Jean-Francois (Corresponding author); Renaut, Jenny.

In: Frontiers in Plant Science, Vol. 6, 2015, p. 237.

Publication: Contribution to journal › Article

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An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community. / Bastow, Ruth; Beynon, Jim; Estelle, Mark; Weckwerth, Wolfram.

In: The Plant Cell, Vol. 22, 2010, p. 2530-2536.

Publication: Contribution to journal › Article

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AN OPTIMIZED METHOD FOR THE ISOLATION OF NUCLEI FROM CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE). / Winck, Flavia Vischi; Kwasniewski, Miroslaw; Wienkoop, Stefanie (Corresponding author); Müller-Röber, Bernd.

In: Journal of Phycology: an international journal of algal research, Vol. 47, No. 2, 2011, p. 333-340.

Publication: Contribution to journal › Article

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Approximating subcellular organisation of carbohydrate metabolism during cold acclimation in different natural accessions of Arabidopsis thaliana. / Nägele, Thomas; Heyer, Arnd G. (Corresponding author).

In: New Phytologist, Vol. 198, No. 3, 14.03.2013, p. 777-787.

Publication: Contribution to journal › Article

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Approximating the stabilization of cellular metabolism by compartmentalization. / Fürtauer, Lisa; Nägele, Thomas (Corresponding author).

In: Theory in Biosciences, Vol. 135, No. 1, 05.04.2016, p. 73-87.

Publication: Contribution to journal › Article

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Arabidopsis calcium-binding mitochondrial carrier proteins as potential facilitators of mitochondrial ATP-import and plastid SAM-import. / Stael, Simon Lander; Rocha, Agostinho G.; Robinson, Alan; Kmiecik, Przemyslaw; Vothknecht, Ute; Teige, Markus (Corresponding author).

In: FEBS Letters, Vol. 585, No. 24, 2011, p. 3935-3940.

Publication: Contribution to journal › Article

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Arabidopsis thaliana as a model organism for plant proteome research. / Wienkoop, Stefanie (Corresponding author); Baginsky, Sacha; Weckwerth, Wolfram.

In: Journal of Proteomics, Vol. 73, No. 11, 2010, p. 2239-2248.

Publication: Contribution to journal › Article

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Assessing the molecular mechanism of D. radiodurans survivability in space: establishment of ground controls. / Kutlucinar, Kaan Georg; Weckwerth, Wolfram; Milojevic, Tetyana.

2015. Poster session presented at Astrobiology and Space Medicine workshop, Graz, Austria.

Publication: Contribution to conference › Poster

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Authentication of Cereal Flours by Multivariate Analysis of GC-MS Data. / Pastor, Kristian (Corresponding author); Acanski, Marijana; Vujic, Dura; Jovanovic, Dorde; Wienkoop, Stefanie.

In: Chromatographia, Vol. 79, No. 19-20, 10.2016, p. 1387-1393.

Publication: Contribution to journal › Article

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Automated protein turnover calculations from 15N partial metabolic labeling LC/MS shotgun proteomics data. / Lyon, David; Castillejo, Maria Angeles; Staudinger, Christiana; Weckwerth, Wolfram; Wienkoop, Stefanie; Egelhofer, Volker.

In: PLoS ONE, Vol. 9, No. 4, 2014, p. e94692.

Publication: Contribution to journal › Article

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Beziehungen zwischen bodenchemischen und bodenbiologischen Parametern in Naturwäldern. / Hackl, Evelyn; Bachmann, Gert; Pfeffer, Michael; Donat, Christina; Zechmeister-Boltenstern, Sophie.

In: Mitteilungen der Österreichischen Bodenkundlichen Gesellschaft, Vol. 59, 2000, p. 17-20.

Publication: Contribution to journal › Article

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Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction. / Stare, Tjaša (Corresponding author); Ramšak, Živa; Blejec, Andrej; Stare, Katja; Turnšek, Neža; Weckwerth, Wolfram; Wienkoop, Stefanie; Vodnik, Dominik; Gruden, Kristina.

In: BMC Genomics, Vol. 16, No. 1, 2015, p. 716.

Publication: Contribution to journal › Article

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Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis. / Furuhashi, Takeshi; Nakamura, Takemichi; Fragner, Lena; Roustan, Valentin; Schoen, Verena; Weckwerth, Wolfram.

In: Biotechnology Journal, Vol. 11, No. 10, 10.2016, p. 1262-1267.

Publication: Contribution to journal › Article

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Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects. / Agrawal, Ganesh Kumar (Corresponding author); Sarkar, Abhijit; Agrawal, Raj; Wienkoop, Stefanie; Weckwerth, Wolfram.

In: Proteomics, Vol. 12, No. 3, 2012, p. 359-368.

Publication: Contribution to journal › Article

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Boron nitride as desalting material in combination with phosphopeptide enrichment in shotgun proteomics. / Furuhashi, Takeshi; Nukarinen, Ella; Ota, Shigenori; Weckwerth, Wolfram.

In: Analytical Biochemistry, Vol. 452, 01.05.2014, p. 16-18.

Publication: Contribution to journal › Article

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Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana. / Khan, Mamoona; Rozhon, Wilfried; Bigeard, Jean; Pflieger, Delphine; Husar, Sigrid; Pitzschke, Andrea; Teige, Markus; Jonak, Claudia; Hirt, Heribert; Poppenberger, Brigitte.

In: Journal of Biological Chemistry, Vol. 288, No. 11, 15.03.2013, p. 7519-7527.

Publication: Contribution to journal › Article

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Cajanus cajan -a source of PPARγ activators leading to anti-inflammatory and cytotoxic effects. / Schuster, Roswitha; Holzer, Wolfgang; Doerfler, Hannes; Weckwerth, Wolfram; Viernstein, Helmut; Okonogi, Siriporn; Mueller, Monika (Corresponding author).

In: Food & Function: linking the chemistry and physics of food with health and nutrition, Vol. 7, No. 9, 01.09.2016, p. 3798-3806.

Publication: Contribution to journal › Article

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Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. / Larrainzar, Estibaliz; Wienkoop, Stefanie (Corresponding author); Scherling, Christian; Kempa, Stefan; Ladrera, Ruben; Arrese-Igor, Cesar; Weckwerth, Wolfram; Gonzalez, Esther M. (Corresponding author).

In: Molecular Plant - Microbe Interactions, Vol. 22, No. 12, 2009, p. 1565-1576.

Publication: Contribution to journal › Article

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Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming. / Chaturvedi, Palak; Ischebeck, Till; Egelhofer, Volker; Lichtscheidl-Schultz, Irene; Weckwerth, Wolfram.

In: Journal of Proteome Research, Vol. 12, No. 11, 01.11.2013, p. 4892-4903.

Publication: Contribution to journal › Article

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Challenges of Inversely Estimating Jacobian from Metabolomics Data. / Sun, Xiaoliang (Corresponding author); Länger, Bettina; Weckwerth, Wolfram.

In: Frontiers in bioengineering and biotechnology, Vol. 3, 2015, p. 188.

Publication: Contribution to journal › Article

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Changes in plastid proteome and structure in arbuscular mycorrhizal roots display a nutrient starvation signature. / Daher, Zeina; Recorbet, Ghislaine (Corresponding author); Solymosi, Katalin; Wienkoop, Stefanie; Mounier, Arnaud; Morandi, Dominique; Lherminier, Jeannine; Wipf, Daniel; Dumas-Gaudot, Eliane; Schoefs, Benoît.

In: Physiologia Plantarum, Vol. 159, No. 1, 25.08.2016, p. 13-29.

Publication: Contribution to journal › Article

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Chapter 7: Metabolic engineering. In: Molecular Biology and Biotechnology, Royal Society of Chemistry. / Weckwerth, Wolfram; Kempa, Stefan; Walther, Dirk; Ebenhöh, Oliver.

Molecular Biology and Biotechnology. RSC Publishing, 2009.

Publication: Contribution to book › Chapter

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Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms. / Schulz, Philipp; Neukermans, Jenny; Van der Kelen, Katrien; Mühlenbock, Per; Van Breusegem, Frank; Noctor, Graham; Teige, Markus; Metzlaff, Michael; Hannah, Matthew A.

In: PLoS ONE, Vol. 7, No. 5, 2012, p. e37287.

Publication: Contribution to journal › Article

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Chloroplast isolation and affinity chromatography for enrichment of low-abundant proteins in complex proteomes. / Bayer, Roman G; Stael, Simon; Teige, Markus.

In: Methods in Molecular Biology, Vol. 1295, 2015, p. 211-23.

Publication: Contribution to journal › Article

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Chloroplast pentose-5-phosphate 3-epimerase from potato : Cloning, cDNA sequence, and tissue-specific enzyme accumulation. / Teige, M; Kopriva, S; Bauwe, H; Suss, KH.

In: FEBS Letters, Vol. 377, No. 3, 27.12.1995, p. 349-352.

Publication: Contribution to journal › Article

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Chloroplast-localized protein kinases : a step forward towards a complete inventory. / Bayer, Roman G; Stael, Simon; Rocha, Agostinho G; Mair, Andrea; Vothknecht, Ute C; Teige, Markus.

In: Journal of Experimental Botany, Vol. 63, No. 4, 02.2012, p. 1713-23.

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Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression. / Linke, Monika; Ha Thi Thanh Pham; Katholnig, Karl; Schnoelller, Thomas; Miller, Anne; Demel, Florian; Schuetz, Birgit; Rosner, Margit; Kovacic, Boris; Sukhbaatar, Nyamdelger; Niederreiter, Birgit; Blueml, Stephan; Kuess, Peter; Sexl, Veronika; Mueller, Mathias; Mikula, Mario; Weckwerth, Wolfram; Haschemi, Arvand; Susani, Martin; Hengstschlaeger, Markus; Gambello, Michael J.; Weichhart, Thomas (Corresponding author).

In: Nature Immunology, Vol. 18, No. 3, 03.2017, p. 293-302.

Publication: Contribution to journal › Article

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Combined label-free quantification techniques to detect water deficit induced changes in the Medicago truncatula proteome. / Staudinger, Christiana; Castillejo Sanchez, Marie-Angeles; Mehmeti-Tershani, Vlora; Lyon, David; Egelhofer, Volker; Wienkoop, Stefanie.

2013. Poster session presented at Proteomic Forum 2013, Berlin, Germany.

Publication: Contribution to conference › Poster

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