Publications

Tienda-Parrilla M, López-Hidalgo C, Sánchez-Parra M, Ordóñez-Díaz JL, Moreno-Rojas JM, Weckwerth W et al. Integrated nutritional, phytochemical, and metabolomic characterization of Mediterranean Quercus acorns: implications for species traceability and functional food applications. Applied Food Research. 2026 Dec;6(2):102483. doi: 10.1016/j.afres.2026.102483

Weinberger M, Schillaci L, Rumancev C, Bretschneider T, Garrevoet J, Rosenhahn A et al. Quantitative μ-SRXRF mapping of Mn and Fe in moss leaflets using Compton-based thickness correction. Spectrochimica Acta - Part B Atomic Spectroscopy. 2026 Nov;245:107626. doi: 10.1016/j.sab.2026.107626

Stegner M, Fehringer K, Flörl A, Strasser AL, Lindner J, Plangger S et al. Cytorrhysis under drought, osmotic and freezing stress. Protoplasma. 2026 Sept 19. Epub 2026 Sept 19. doi: 10.1007/s00709-026-02263-1

Preiner J, Wienkoop S, Steccari I, Oburger E. Excess molybdenum impairs growth, nitrogen metabolism and nutrient translocation of soybean in Bradyrhizobium symbiosis, with parallels to tungsten stress. Frontiers in Plant Science. 2026 Aug 7;17-2026. doi: 10.3389/fpls.2026.1905971

Rauschkolb R, Dietrich V, Knickmann B, Nordt B, Freiberg M, Hensen I et al. Above- and Belowground Traits are Linked Within Species, but Vary Differently Along Environmental Gradients. Ecology and Evolution. 2026 Aug;16(8):e74109. doi: 10.1002/ece3.74109

Rolle P, Auricht H, Marcut A, López-Hidalgo C, Weckwerth W, Waldherr S et al. A metabolic model of the leaf-associated bacterium Paraburkholderia dioscoreae links the ethylene precursor ACC to core carbon pathways. mSystems. 2026 Jul 13. doi: 10.1128/msystems.00514-26

Broux K, Bäcker LE, Oome D, Baert F, Vandenborre J, Schoeters S et al. Defiance of stable lysogeny reveals hidden infection dynamics of phage Lambda. Proceedings of the National Academy of Sciences of the United States of America. 2026 Jun 23;123(25):e2600726123. doi: 10.1073/pnas.2600726123

Tschimmel D, Hucho T, Waldherr S. Modelling the effect of antibody depletion for dose-response behavior of common immunostaining protocols. Journal of Mathematical Biology. 2026 Jun;92(6):97. doi: 10.1007/s00285-026-02394-2

Kramml HM, Herpell JB, Priemer C, Wessely Z, Schindler F, Berger A et al. Clusia genomes shed light on the evolution and diversity of crassulacean acid metabolism physiotypes. Nature Communications. 2026 May 5;17(1):3937. doi: 10.1038/s41467-026-71958-z

Weidlich S, Priemer C, Aires T, Brenner M, Weckwerth W, Engelen A et al. Bioremediation of ozone-produced oxidants in marine RAS using Ulva ohnoi: benefits and impacts on seaweed physiology and associated microbiomes. Journal of Applied Phycology. 2026 Apr 20. doi: 10.1007/s10811-026-03850-8

Pierides I, Kramml HM, Waldherr S, Weckwerth W. Kernel-DMD for multiome data integration and control. PLoS Computational Biology. 2026 Mar 31;22(3):1-28. doi: 10.1371/journal.pcbi.1014029

Groot-Crego C, Saadain S, De La Harpe M, Hess J, Barfuss MHJ, Till W et al. Divergent Transcriptional Architectures Beyond Core CAM Genes in Facultative and Constitutive CAM Species in Tillandsia L. Molecular Ecology. 2026 Mar;35(6):e70313. doi: 10.1111/mec.70313

Busschaert M, Schagerl M, Griebler C, Vermeire FH, Waldherr S. Inferring cell division kinetics in Chlamydomonas reinhardtii from flow cytometry with Gaussian process regression. Bioresource Technology. 2026 Mar;443:133835. doi: 10.1016/j.biortech.2025.133835

Pazhamala L, Pandey M, Deveshwar P, Ghatak A, Weckwerth W, Chaturvedi P et al. Network-based multiomics and transgenic validation reveal that OsPHR3 modulates phosphate-carbon metabolic trade-offs during rice seed development. Plant Physiology and Biochemistry. 2026 Feb;231:110981. Epub 2025 Dec 22. doi: 10.1016/j.plaphy.2025.110981

Lüthje S, Gül Yilmaz A, Ramanathan K, Gräfenstein W, Tabbert JM, Wienkoop S et al. Cellular Responses of Maize Roots to Long-Term Cadmium Exposure: Adjustments of Class III Peroxidases, Plasma Membrane and Tonoplast Sub-Proteomes. Proteomes. 2026;14(1):11. doi: 10.3390/proteomes14010011

Tschimmel D, Saeed M, Milani M, Waldherr S, Hucho T. Computational epitope heterogeneity analysis in immunostainings from antibody-dilution series. Communications Biology. 2026;9(1):238. doi: 10.1038/s42003-026-09517-x