Papers

Machine learning and data-driven inverse modeling of metabolomics unveil key processes of active aging. / Li, Jiahang; Brenner, Martin ; Pierides, Iro et al.
In: Npj systems biology and applications, Vol. 11, No. 1, 103, 12.2025.

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Metabolic response of a chemolithoautotrophic archaeon to carbon limitation. / Hodgskiss, Logan H (Corresponding author); Kerou, Melina ; Luo, Zhen-Hao et al.
In: mSystems, Vol. 10, No. 10, e0073225, 22.10.2025, p. 1-20.

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Natural variation of the wheat root exudate metabolome and its influence on biological nitrification inhibition activity. / Ghatak, Arindam; Kanellopoulos, Alexandros E; López-Hidalgo, Cristina et al.
In: Plant Biotechnology Journal, 21.07.2025.

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Microautophagy in cereal grains: protein storage or degradation? / Plott, Stefan; Dagdas, Yasin; Ibl, Verena (Corresponding author).
In: Trends in Plant Science, Vol. 30, No. 7, 07.2025, p. 736-744.

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Natural variation of the holobiont for sustainable agroecosystems. / Weckwerth, Wolfram (Corresponding author); Chaturvedi, Palak ; Ghatak, Arindam et al.
In: Trends in Plant Science, 27.06.2025.

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Enhancing human gut health: Global innovations in dysbiosis management. / El Boukhari, Reda; Matin, Maima; Bouissane, Latifa et al.
In: iMeta, Vol. 4, No. 3, e70028, 06.2025.

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Millets for a sustainable future. / Ghatak, Arindam ; Pierides, Iro; Singh, Roshan Kumar et al.
In: Journal of Experimental Botany, Vol. 76, No. 6, 09.04.2025, p. 1534-1545.

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Coupling activated sludge models and population balance models to predict size distribution dynamics of nitrifier microcolonies in sludge flocs. / Totis, Niccolò; Christiaens, An Sofie; Smets, Ilse et al.
In: Journal of Water Process Engineering, Vol. 71, 107085, 03.2025.

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Niche creation improves bioaugmentation of an organic micropollutant degrader in oligotrophic waters. / Wang, Jinsong; Raes, Bart; Debrabandere, Cato et al.
In: ISME Journal, Vol. 19, No. 1, wraf140, 01.01.2025.

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Dynamic Bioreactor Model of Polyhydroxybutyrate Production from Methane: Investigating Various Feeding Strategies: ACS Sustainable Chemistry & Engineering. / Nasershariat, Mohadeseh; Pishvaie, Mahmoud R; Bozorgmehry, Ramin Boozarjomehry et al.
In: ACS Sustainable Chem. Eng., Vol. 13, No. 31, 2025, p. 12337-12344.

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Multi-Objective Optimization of Biomass and Riboflavin Production Using Dynamic Flux Balance Analysis: A Study of Methylocystis Hirsuta. / Nasershariat, Mohadeseh; Pishvaie, Mahmoud Reza; Boozarjomehry, Ramin Bozorgmehry et al.
Proceedings of the 11th World Congress on New Technologies, NewTech 2025. ed. / Devika Chithrani; Domenico Lombardo. Avestia Publishing, 2025. (Proceedings of the World Congress on New Technologies).

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Comparative analysis of geotypic variations in the proteome of Nostoc commune. / Routray, Deepti; Ghatak, Arindam ; Chaturvedi, Palak et al.
In: Plant Signaling & Behavior, Vol. 19, No. 1, 2370719, 31.12.2024.

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Polygenic Risk Score Simulation: A case study of sudden cardiovascular diseases derived from literature insights. / Schwarzerova, Jana; Piherova, Lenka; Polakovicova, Petra et al.
2024 IEEE International Conference on Bioinformatics and Biomedicine. ed. / Mario Cannataro; Huiru Zheng; Lin Gao; Jianlin Cheng; Joao Luis de Miranda; Ester Zumpano; Xiaohua Hu; Young-Rae Cho; Taesung Park. 2024. p. 5081-5088 (IEEE International Conference on Bioinformatics and Biomedicine).

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A giant virus infecting the amoeboflagellate Naegleria. / Arthofer, Patrick; Panhölzl, Florian; Delafont, Vincent et al.
In: Nature Communications, Vol. 15, No. 1, 3307, 12.2024.

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Natural variation in the chickpea metabolome under drought stress. / Chaturvedi, Palak (Corresponding author); Pierides, Iro ; López-Hidalgo, Cristina et al.
In: Plant Biotechnology Journal, Vol. 22, No. 12, 12.2024, p. 3278-3294.

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Network structure and fluctuation data improve inference of metabolic interaction strengths with the inverse Jacobian. / Li, Jiahang; Weckwerth, Wolfram ; Waldherr, Steffen.
In: Npj systems biology and applications, Vol. 10, No. 1, 137, 12.2024.

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Where to after COVID-19? Systems thinking for a human-centred approach to pandemics. / Mormina, Maru; Müller, Bernhard; Caniglia, Guido et al.
In: Humanities and Social Sciences Communications, Vol. 11, No. 1, 733, 12.2024.

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Omics Technologies: A Strategy to Expedite the Geographical Traceability and Authenticity of Palm Oil. / Rozali, Nurul Liyana; Ramli, Umi Salamah; Singh, Rajinder et al.
In: Food and Bioprocess Technology, 18.11.2024.

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CAM evolution is associated with gene family expansion in an explosive bromeliad radiation. / Groot Crego, Clara (Corresponding author); Hess, Jaqueline; Yardeni, Gil et al.
In: The Plant Cell, Vol. 36, No. 10, 03.10.2024, p. 4109-4131.

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Accelerating wheat improvement through trait characterization: advances and perspectives. / Roychowdhury, Rajib; Ghatak, Arindam; Kumar, Manoj et al.
In: Physiologia Plantarum, Vol. 176, No. 5, e14544, 10.2024, p. e14544.

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