Papers

Inferring cell division kinetics in Chlamydomonas reinhardtii from flow cytometry with Gaussian process regression. / Busschaert, Michiel; Schagerl, Michael ; Griebler, Christian et al.
In: Bioresource Technology, 03.2026.

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Benchmarking Variant Calling Algorithms for the Analysis of Genomic Data in Panel Sequencing. / Novotny, Jiri; Schwarzerova, Jana; Neuwirthova, Jana et al.
Bioinformatics and Biomedical Engineering - 12th International Conference, IWBBIO 2025, Proceedings. ed. / Ignacio Rojas; Francisco Ortuño; Fernando Rojas Ruiz; Luis Javier Herrera; Juan José Escobar; Olga Valenzuela. Springer Science and Business Media Deutschland GmbH, 2026. p. 73-84 (Lecture Notes in Computer Science, Vol. 16051 LNCS).

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Protein Extraction Protocol for Legumes Compatible with Detergent: Gel Fractionation and Mass Spectrometry. / Chaturvedi, Palak ; Ghatak, Arindam ; López-Hidalgo, Cristina et al.
In: Methods in Molecular Biology, Vol. 2977, 2026, p. 153-165.

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Network-based multiomics and transgenic validation reveal that OsPHR3 modulates phosphate-carbon metabolic trade-offs during rice seed development. / Pazhamala, Lekha; Pandey, Mandavi; Deveshwar, Priyanka et al.
In: Plant Physiology and Biochemistry, Vol. 231, 22.12.2025, p. 110981.

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Seed metabolites headstart haustoriogenesis and potentiate aggressiveness of parasitic weeds. / Brun, Guillaume; Schindler, Florian; Bouyrakhen, Amal et al.
In: Science Advances, Vol. 11, No. 50, 12.12.2025, p. eaea1449.

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With or without a Ca2+ signal? a proteomics approach toward Ca2+-dependent and -independent changes in response to oxidative stress in Arabidopsis thaliana. / van Dieren, Annelotte; Bittner, Andras; Wurzinger, Bernhard et al.
In: Planta, Vol. 263, No. 1, 05.12.2025, p. 23.

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MCL1 modulates mTORC1 signaling to promote bioenergetics and tumorigenesis. / Gui, Wentao; Paral, Petr; Dhamija, Bhavuk et al.
In: Nature Communications, Vol. 16, No. 1, 01.12.2025, p. 10841.

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Machine learning and data-driven inverse modeling of metabolomics unveil key processes of active aging. / Li, Jiahang; Brenner, Martin ; Pierides, Iro et al.
In: Npj systems biology and applications, Vol. 11, No. 1, 103, 12.2025.

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Natural variation of the wheat root exudate metabolome and its influence on biological nitrification inhibition activity. / Ghatak, Arindam; Kanellopoulos, Alexandros E; López-Hidalgo, Cristina et al.
In: Plant Biotechnology Journal, Vol. 23, No. 11, 11.2025, p. 4755-4772.

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Metabolic response of a chemolithoautotrophic archaeon to carbon limitation. / Hodgskiss, Logan H (Corresponding author); Kerou, Melina ; Luo, Zhen-Hao et al.
In: mSystems, Vol. 10, No. 10, e0073225, 22.10.2025, p. 1-20.

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Metabolic characteristics of catechin (monomeric flavan-3-ols), B-type linkage flavan-3-ols and A-type linkage flavan-3-ols revealed by un-targeted and targeted metabolomics. / Liu, Ruonan; Chen, Wanbing; Lu, Qun et al.
In: Food Research International, Vol. 217, 10.2025, p. 116357.

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Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data. / Idkowiak, Jakub; Dehairs, Jonas; Schwarzerová, Jana et al.
In: Nature Communications, Vol. 16, No. 1, 30.09.2025, p. 8714.

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Hesperetin Protects from Palmitic-Acid-Induced Lipotoxicity through the Inhibition of Glutaminolysis, mTORC1 Signaling, and Limited Apoptosis. / Li, Wan; Cai, Zhengnan; Schindler, Florian et al.
In: Journal of Agricultural and Food Chemistry, Vol. 73, No. 35, 03.09.2025, p. 21932-21946.

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From the shoot to the rhizosphere: The short-term cascade impact of aerial microplastic. / Bouaicha, Oussama; Trevisan, Fabio; Tiziani, Raphael et al.
In: Environmental and Experimental Botany, Vol. 237, 106222, 09.2025.

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Microautophagy in cereal grains: protein storage or degradation? / Plott, Stefan; Dagdas, Yasin; Ibl, Verena (Corresponding author).
In: Trends in Plant Science, Vol. 30, No. 7, 07.2025, p. 736-744.

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Natural variation of the holobiont for sustainable agroecosystems. / Weckwerth, Wolfram (Corresponding author); Chaturvedi, Palak ; Ghatak, Arindam et al.
In: Trends in Plant Science, 27.06.2025.

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Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée. / Godec, Tim; Beier, Sebastian; Rodriguez-Granados, Natalia Yaneth et al.
In: Scientific Data, Vol. 12, No. 1, 20.06.2025, p. 1044.

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The burning glass effect of water droplets triggers a high light-induced calcium response in the chloroplast stroma. / Kuang, Dominic; Romand, Shanna; Zvereva, Anna S et al.
In: Current Biology, Vol. 35, No. 11, 09.06.2025, p. 2642-2658.e7.

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Enhancing human gut health: Global innovations in dysbiosis management. / El Boukhari, Reda; Matin, Maima; Bouissane, Latifa et al.
In: iMeta, Vol. 4, No. 3, e70028, 06.2025.

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Millets for a sustainable future. / Ghatak, Arindam ; Pierides, Iro; Singh, Roshan Kumar et al.
In: Journal of Experimental Botany, Vol. 76, No. 6, 09.04.2025, p. 1534-1545.

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